Co-expression analysis

Gene ID PtpAffx.18484.1.A1_at
Gene name hypothetical protein /// glutamate-gated kainate-type ion channel receptor subunit GluR5
Homology with ArabidopsisSimilar to At2g17265: HSK (HOMOSERINE KINASE) (HF=2e-12)
Module size 11 genes
NF 0.14
%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.91PtpAffx.18484.1.A1_atCV245083hypothetical protein /// glutamate-gated kainate-type ion channel receptor subunit GluR5-2e-12At2g17265HSK (HOMOSERINE KINASE)O.I.H.G.S.X.
0.4471.90.96Ptp.6771.1.S1_s_atCV274176hypothetical protein-6e-19At2g3206040S ribosomal protein S12 (RPS12C)O.I.H.G.S.X.
0.4471.90.95Ptp.7561.1.S1_s_atCV280263--2e-68At3g11940ATRPS5A (RIBOSOMAL PROTEIN 5A)O.I.H.G.S.X.
0.3559.70.97Ptp.5846.1.S1_s_atCV238868hypothetical protein-1e-50At5g1552040S ribosomal protein S19 (RPS19B)O.I.H.G.S.X.
0.3357.50.96Ptp.4312.1.S1_s_atCV260801hypothetical protein-4e-50At5g5985040S ribosomal protein S15A (RPS15aF)O.I.H.G.S.X.
0.3153.70.96Ptp.652.1.S1_s_atCX179294hypothetical protein-2e-76At4g00100ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)O.I.H.G.S.X.
0.2950.50.97Ptp.2403.1.S1_s_atCV259541hypothetical protein-1e-14At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.2543.60.96PtpAffx.25979.1.S1_atDN488054hypothetical protein-3e-12At4g16630DEAD/DEAH box helicase, putative (RH28)O.I.H.G.S.X.
0.2034.60.97Ptp.5545.1.S1_s_atCN524341hypothetical protein-2e-47At3g0963060S ribosomal protein L4/L1 (RPL4A)O.I.H.G.S.X.
0.0711.60.93PtpAffx.222229.1.S1_atpmrna39505SET domain protein-1e-29At3g21820ATXR2 (HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2)O.I.H.G.S.X.
0.023.60.94PtpAffx.17440.1.S1_atCV229151hypothetical protein-1e-49At5g09900EMB2107 (EMBRYO DEFECTIVE 2107)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.095.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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