Co-expression analysis

Gene ID	PtpAffx.18211.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g11060: MTSSB (mitochondrially targeted single-stranded DNA binding protein) (HF=9e-2)
Module size	7 genes
NF	0.47
%ile	77.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.88	PtpAffx.18211.1.A1_at	CV257248	hypothetical protein	-	9e-2	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.90	PtpAffx.101690.1.A1_at	CV255238	-	-	9e-1	At5g41401	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.88	PtpAffx.33045.1.A1_at	CK089245	-	-	5e+0	At2g29045	LCR62 (Low-molecular-weight cysteine-rich 62)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.89	PtpAffx.220781.1.S1_at	pmrna37212	cytochrome P450	-	2e+0	At2g19850	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.90	PtpAffx.29085.1.A1_s_at	DN489411	-	-	4e+0	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.42652.1.S1_at	CV268229	histone H3	-	1e-1	At1g01370	HTR12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.88	PtpAffx.225505.1.S1_at	pmrna44896	hypothetical protein	-	5e-35	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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