Co-expression analysis

Gene ID	PtpAffx.18096.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g78800: glycosyl transferase family 1 protein (HF=1e-6)
Module size	17 genes
NF	0.42
%ile	70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	88.6	0.95	PtpAffx.18096.1.A1_at	CV261250	-	-	1e-6	At1g78800	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.97	PtpAffx.12741.1.A1_at	CV234093	-	-	8e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.97	Ptp.4622.1.S1_s_at	BP930041	hypothetical protein	-	7e-93	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.97	Ptp.1338.1.A1_at	CV245431	-	-	2e-55	At5g03730	CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.6541.1.S1_a_at	CV227360	hypothetical protein	-	1e-32	At1g63290	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.97	PtpAffx.18888.2.S1_at	CV268392	hypothetical protein	-	5e-9	At3g14010	CID4 (CTC-Interacting Domain 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.96	Ptp.5696.1.S1_s_at	CV240717	hypothetical protein	-	5e-41	At2g19830	SNF7.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.97	PtpAffx.39424.1.S1_at	CV231501	hypothetical protein	-	4e-48	At1g30640	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.97	PtpAffx.108603.1.A1_s_at	CV279639	hypothetical protein	-	8e-1	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.97	PtpAffx.11565.1.A1_at	CV241013	hypothetical protein	-	2e-12	At4g27000	ATRBP45C	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	PtpAffx.30368.1.S1_at	CV254627	hypothetical protein	-	1e-1	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.97	PtpAffx.2772.1.S1_at	CV245214	-	-	2e-65	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.100467.1.S1_at	CX657915	hypothetical protein	-	8e-40	At4g16144	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	Ptp.1847.1.A1_s_at	CK093485	hypothetical protein	-	7e-17	At2g23070	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.6505.1.A1_s_at	CV238517	hypothetical protein	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.48817.3.S1_a_at	CV262816	hypothetical protein	-	5e-101	At3g14100	oligouridylate-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.97	PtpAffx.210951.1.S1_at	pmrna21517	hypothetical protein	-	2e-34	At3g05010	transmembrane protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	97.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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