Co-expression analysis

Gene ID	PtpAffx.18005.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g15260: UDP-glucoronosyl/UDP-glucosyl transferase family protein (HF=1e-1)
Module size	6 genes
NF	0.07
%ile	15.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.86	PtpAffx.18005.2.A1_at	CV283422	-	-	1e-1	At4g15260	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.90	PtpAffx.125962.1.S1_at	AJ769351	hypothetical protein	-	5e+0	At4g21216	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.89	PtpAffx.63762.1.A1_at	CV228189	hypothetical protein	-	8e-1	At2g17410	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.88	PtpAffx.208877.1.S1_at	pmrna17593	hypothetical protein	-	2e+0	At2g38100	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.89	PtpAffx.127443.1.A1_at	CV255091	-	-	5e-10	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.86	Ptp.7275.1.S1_s_at	BU898216	hypothetical protein	-	2e-78	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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