Co-expression analysis

Gene ID PtpAffx.17949.1.A1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g13190: - (HF=3e-17)
Module size 6 genes
NF 0.56
%ile 86.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.96PtpAffx.17949.1.A1_a_atCV230098hypothetical protein-3e-17At5g13190-O.I.H.G.S.X.
0.6791.10.96PtpAffx.35380.1.S1_a_atCV256335hypothetical protein-1e+0Atmg00900-O.I.H.G.S.X.
0.4673.70.95PtpAffx.34171.2.S1_a_atDN494098--4e+0At5g16840BPA1 (BINDINGPARTNEROFACD11 1)O.I.H.G.S.X.
0.4471.90.96PtpAffx.7711.1.A1_s_atCN520343hypothetical protein-5e-10At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.4471.90.96PtpAffx.68429.1.S1_atDN493879hypothetical protein-1e-8At3g58710WRKY69O.I.H.G.S.X.
0.3661.60.96PtpAffx.201765.1.S1_atpmrna3523NAC domain protein, IPR003441-2e-11At1g34190anac017 (Arabidopsis NAC domain containing protein 17)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.095.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.393.7GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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