Co-expression analysis

Gene ID PtpAffx.17771.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g75220: integral membrane protein, putative (HF=4e-13)
Module size 6 genes
NF 0.47
%ile 77.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95PtpAffx.17771.1.A1_atCV273533hypothetical protein-4e-13At1g75220integral membrane protein, putativeO.I.H.G.S.X.
0.5582.20.96PtpAffx.5406.1.A1_a_atCV283796hypothetical protein-1e-10At2g15290TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)O.I.H.G.S.X.
0.5380.50.95PtpAffx.224342.1.S1_atpmrna42806hypothetical protein-2e-17At3g53700MEE40 (maternal effect embryo arrest 40)O.I.H.G.S.X.
0.5078.60.95PtpAffx.202616.1.S1_atpmrna5233ABC transporter family protein-8e-27At1g19800TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)O.I.H.G.S.X.
0.3052.00.96Ptp.4121.1.S1_s_atBP934370glutathione-dependent formaldehyde dehydrogenase-1e-44At5g43940HOT5 (sensitive to hot temperatures 5)O.I.H.G.S.X.
0.2238.30.96PtpAffx.54604.1.S1_atDN486358hypothetical protein-1e-7At4g12060Clp amino terminal domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.998.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
8.498.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.497.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.296.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.096.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.785.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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