Co-expression analysis

Gene ID PtpAffx.17675.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g66930: unknown protein (HF=2e+1)
Module size 34 genes
NF 0.33
%ile 58.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9097.90.91PtpAffx.17675.1.A1_atCV277098--2e+1At5g66930unknown proteinO.I.H.G.S.X.
0.6588.60.95Ptp.6091.1.S1_atCV281339hypothetical protein-2e-33At4g13500unknown proteinO.I.H.G.S.X.
0.5582.20.92PtpAffx.6733.5.A1_atCV277665hypothetical protein-5e-8At3g01500CA1 (CARBONIC ANHYDRASE 1)O.I.H.G.S.X.
0.4975.70.92PtpAffx.13092.1.S1_atCV268630hypothetical protein-1e-8At5g23060CaS (Calcium sensing receptor)O.I.H.G.S.X.
0.4875.40.92PtpAffx.37920.1.A1_atCV270540thioredoxin m-2e-3At3g15360TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)O.I.H.G.S.X.
0.4673.70.95PtpAffx.17648.2.A1_a_atCV278457hypothetical protein-6e-6At1g22850-O.I.H.G.S.X.
0.4673.70.94Ptp.5271.1.S1_atCV238996hypothetical protein-9e-12At4g25910NFU3O.I.H.G.S.X.
0.4572.30.94Ptp.5283.1.S1_s_atCN518834--4e-1At3g07390AIR12O.I.H.G.S.X.
0.4268.60.92PtpAffx.43698.1.A1_atCV261034--2e-15At1g74640unknown proteinO.I.H.G.S.X.
0.4167.70.92PtpAffx.30347.1.A1_atCV281013hypothetical protein-1e-1At1g11290CRR22 (CHLORORESPIRATORY REDUCTION22)O.I.H.G.S.X.
0.3762.30.96Ptp.2781.1.S1_a_atCV255996hypothetical protein-5e-53At2g04700ferredoxin thioredoxin reductase catalytic beta chain family proteinO.I.H.G.S.X.
0.3762.30.94PtpAffx.132099.1.A1_atDN490870--6e+0At3g24110calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3458.30.92PtpAffx.164020.1.S1_atCK318557hypothetical protein-6e-1At3g1358060S ribosomal protein L7 (RPL7D)O.I.H.G.S.X.
0.3458.30.95Ptp.6962.1.S1_s_atCV280657hypothetical protein-1e-14At4g39710immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeO.I.H.G.S.X.
0.3357.50.94PtpAffx.56132.1.S1_atCV276731--3e-8At4g09650ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)O.I.H.G.S.X.
0.3357.50.94Ptp.5354.1.S1_atCV232039hypothetical protein-2e-2At4g14890ferredoxin family proteinO.I.H.G.S.X.
0.3255.20.95PtpAffx.7998.1.A1_atCN518947hypothetical protein-1e-45At2g20890PSB29O.I.H.G.S.X.
0.3255.20.95Ptp.5194.1.S1_atCV240064hypothetical protein-1e-20At5g45680FK506-binding protein 1 (FKBP13)O.I.H.G.S.X.
0.3255.20.95PtpAffx.57129.1.A1_atCV237860hypothetical protein-5e+0At5g28050cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.3153.70.96Ptp.5269.1.S1_a_atCV282828hypothetical protein-5e-32At1g67700unknown proteinO.I.H.G.S.X.
0.3153.70.93Ptp.4016.1.A1_atCV280796hypothetical protein-7e-13At2g3541033 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putativeO.I.H.G.S.X.
0.2950.50.95PtpAffx.14324.1.S1_atCV243146hypothetical protein-3e-5At4g23890unknown proteinO.I.H.G.S.X.
0.2950.50.94PtpAffx.29788.1.S1_atCV257853hypothetical protein-8e-68At5g13410immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.2950.50.94PtpAffx.13092.1.S1_a_atCV268630--1e-8At5g23060CaS (Calcium sensing receptor)O.I.H.G.S.X.
0.2950.50.95PtpAffx.222420.1.S1_s_atpmrna39804hypothetical protein-3e-25At5g22620phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.2747.10.93PtpAffx.211122.1.S1_atpmrna21848hypothetical protein-3e-22At1g08540SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)O.I.H.G.S.X.
0.2747.10.93PtpAffx.6619.1.A1_atCV244255hypothetical protein-4e-14At1g54780thylakoid lumen 18.3 kDa proteinO.I.H.G.S.X.
0.2543.60.96Ptp.3375.1.S1_atCV281370hypothetical protein-7e-6At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.2340.50.95PtpAffx.101103.1.A1_atCV278368hypothetical protein-2e-46At1g54500rubredoxin family proteinO.I.H.G.S.X.
0.2340.50.95Ptp.5921.1.S1_atCV282816hypothetical protein-5e-36At4g04640ATPC1O.I.H.G.S.X.
0.2034.60.93Ptp.5242.1.S1_s_atCV276983light-harvesting complex II protein Lhcb6-6e-19At1g15820LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)O.I.H.G.S.X.
0.2034.60.96Ptp.805.1.S1_atCK089501hypothetical protein-1e-23At1g54780thylakoid lumen 18.3 kDa proteinO.I.H.G.S.X.
0.1932.70.96PtpAffx.638.1.S1_atCV238948hypothetical protein-0At1g70580AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.1729.10.92PtpAffx.213253.1.S1_x_atpmrna25921hypothetical protein-0At5g04140GLU1 (GLUTAMATE SYNTHASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.188.6GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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