CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.17660.2.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g23780: zinc finger (C3HC4-type RING finger) family protein (HF=1e-7)

Module size 6 genes

NF 0.33

%ile 57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.93 PtpAffx.17660.2.S1_s_at CV233145 hypothetical protein - 1e-7 At2g23780 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 78.6 0.95 Ptp.148.1.S1_at CV225595 hypothetical protein - 4e-35 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) O.I. H.G. S.X.
0.33 57.5 0.93 Ptp.1266.1.S1_a_at CV252807 hypothetical protein - 2e-31 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) O.I. H.G. S.X.
0.26 45.2 0.94 Ptp.6308.1.S1_at CV229172 hypothetical protein - 1e-10 At3g15340 PPI2 (proton pump interactor 2) O.I. H.G. S.X.
0.24 41.8 0.94 PtpAffx.97277.1.S1_at CV262016 hypothetical protein - 8e-38 At5g51450 RIN3 (RPM1 INTERACTING PROTEIN 3) O.I. H.G. S.X.
0.19 32.7 0.94 PtpAffx.22410.1.S1_at CV272742 hypothetical protein - 5e-29 At3g02290 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.2 95.6 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8 86.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7 85.5 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7 85.5 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.745.1.A1_at, orthologous to the query gene, PtpAffx.17660.2.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 ZmAffx.745.1.A1_at At2g23780 - - 3e+0 At5g17650 glycine/proline-rich protein O.I. H.G. S.X.
0.61 79.5 Zm.19021.1.A1_at At2g23780 virulence-related protein Nf314 - 9e-7 At2g35780 scpl26 (serine carboxypeptidase-like 26) O.I. H.G. S.X.
0.50 65.7 Zm.4299.1.S1_at At2g23780 hypothetical protein LOC100279924 - 5e-14 At3g21630 CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1) O.I. H.G. S.X.
0.50 65.7 Zm.6559.1.A1_at At2g23780 - - 3e-14 At5g26830 threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) O.I. H.G. S.X.
0.38 44.2 Zm.6376.1.A1_at At2g23780 - - 2e-1 At1g68560 XYL1 (ALPHA-XYLOSIDASE 1) O.I. H.G. S.X.
0.19 12.8 ZmAffx.1166.1.A1_at At2g23780 - - 5e-14 At5g19780 TUA5 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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