Co-expression analysis

Gene ID PtpAffx.17660.2.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g23780: zinc finger (C3HC4-type RING finger) family protein (HF=1e-7)
Module size 6 genes
NF 0.33
%ile 57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.93PtpAffx.17660.2.S1_s_atCV233145hypothetical protein-1e-7At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5078.60.95Ptp.148.1.S1_atCV225595hypothetical protein-4e-35At3g55380UBC14 (ubiquitin-conjugating enzyme 14)O.I.H.G.S.X.
0.3357.50.93Ptp.1266.1.S1_a_atCV252807hypothetical protein-2e-31At3g55380UBC14 (ubiquitin-conjugating enzyme 14)O.I.H.G.S.X.
0.2645.20.94Ptp.6308.1.S1_atCV229172hypothetical protein-1e-10At3g15340PPI2 (proton pump interactor 2)O.I.H.G.S.X.
0.2441.80.94PtpAffx.97277.1.S1_atCV262016hypothetical protein-8e-38At5g51450RIN3 (RPM1 INTERACTING PROTEIN 3)O.I.H.G.S.X.
0.1932.70.94PtpAffx.22410.1.S1_atCV272742hypothetical protein-5e-29At3g02290zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.785.5GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1616006_s_at, orthologous to the query gene, PtpAffx.17660.2.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81616006_s_atAt2g23780hypothetical protein LOC100259073-2e+0At1g19310zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5072.71609399_a_atAt2g23780hypothetical protein LOC100263989-2e+0At1g07350transformer serine/arginine-rich ribonucleoprotein, putativeO.I.H.G.S.X.
0.5072.71618710_atAt2g23780similar to Os02g0122000-1e-7At2g45640SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)O.I.H.G.S.X.
0.4969.31612428_atAt2g23780similar to shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4)-2e-81At4g18710BIN2 (BRASSINOSTEROID-INSENSITIVE 2)O.I.H.G.S.X.
0.4767.71621203_atAt2g23780--1e+0At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.4464.11609124_s_atAt2g23780similar to Os12g0438900-5e-6At2g22425peptidaseO.I.H.G.S.X.
0.4464.11608819_atAt2g23780hypothetical protein LOC100266805-4e+0At4g03950glucose-6-phosphate/phosphate translocator, putativeO.I.H.G.S.X.
0.4158.71606997_atAt2g23780hypothetical protein LOC100241540-2e-55At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.4057.71616036_atAt2g23780hypothetical protein LOC100241363-7e-4At4g23630BTI1 (VIRB2-INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.3954.91609093_atAt2g23780hypothetical protein LOC100245204-3e-5At1g01170ozone-responsive stress-related protein, putativeO.I.H.G.S.X.
0.3853.61615672_atAt2g23780hypothetical protein LOC100267237-2e-7At1g51200zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.3751.71610842_a_atAt2g23780hypothetical protein LOC100244638-1e+0At4g27280calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3650.71615944_s_atAt2g23780hypothetical protein LOC100245122-2e-39At4g27130eukaryotic translation initiation factor SUI1, putativeO.I.H.G.S.X.
0.3548.51621462_atAt2g23780hypothetical protein LOC100259318-5e-38At3g22320NRPB5O.I.H.G.S.X.
0.3345.71615237_atAt2g23780hypothetical protein LOC100246592-3e-18At2g37110unknown proteinO.I.H.G.S.X.
0.3141.31612193_atAt2g23780hypothetical protein LOC100257408-8e-53At1g20540transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2837.71609770_atAt2g23780hypothetical protein LOC100244598-2e-1At4g34590GBF6 (G-BOX BINDING FACTOR 6)O.I.H.G.S.X.
0.2837.71619471_atAt2g23780hypothetical protein LOC100243217-1e-112At3g46060ATRAB8AO.I.H.G.S.X.
0.2530.51606671_atAt2g23780hypothetical protein LOC100262399-3e-21At4g31580SRZ-22O.I.H.G.S.X.
0.2530.51619318_atAt2g23780hypothetical protein LOC100248394-5e+0At5g65840-O.I.H.G.S.X.
0.2327.51622873_atAt2g23780hypothetical LOC100251339-2e-11At1g12760protein binding / ubiquitin-protein ligase/ zinc ion bindingO.I.H.G.S.X.
0.2327.51613031_atAt2g23780hypothetical protein LOC100248106-1e-6At1g33520MOS2 (modifier of snc1, 2)O.I.H.G.S.X.
0.2225.61606542_atAt2g23780hypothetical protein LOC100250325-1e+0At2g1045014-3-3 protein, putative / grf15, putativeO.I.H.G.S.X.
0.2022.41610734_s_atAt2g23780hypothetical protein LOC100249556-3e-5At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.H.G.S.X.
0.1616.71611661_atAt2g23780hypothetical protein LOC100245913-2e-5At5g18900oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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