Co-expression analysis

Gene ID	PtpAffx.17660.2.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g23780: zinc finger (C3HC4-type RING finger) family protein (HF=1e-7)
Module size	6 genes
NF	0.33
%ile	57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.93	PtpAffx.17660.2.S1_s_at	CV233145	hypothetical protein	-	1e-7	At2g23780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.148.1.S1_at	CV225595	hypothetical protein	-	4e-35	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	Ptp.1266.1.S1_a_at	CV252807	hypothetical protein	-	2e-31	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.94	Ptp.6308.1.S1_at	CV229172	hypothetical protein	-	1e-10	At3g15340	PPI2 (proton pump interactor 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.94	PtpAffx.97277.1.S1_at	CV262016	hypothetical protein	-	8e-38	At5g51450	RIN3 (RPM1 INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.94	PtpAffx.22410.1.S1_at	CV272742	hypothetical protein	-	5e-29	At3g02290	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	95.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the barley gene, Contig6076_at, orthologous to the query gene, PtpAffx.17660.2.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	Contig6076_at	At2g23780	-	-	1e-2	At4g27470	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	HVSMEc0009B07r2_s_at	At2g23780	-	-	2e-5	At2g43090	aconitase C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig5188_s_at	At2g23780	-	-	5e-12	At5g08420	RNA binding	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig5061_at	At2g23780	-	-	4e-24	At4g01100	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig26489_at	At2g23780	-	-	5e+0	At5g09960	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig24308_at	At2g23780	-	-	9e-1	At3g23850	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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