Co-expression analysis

Gene ID PtpAffx.17660.2.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g23780: zinc finger (C3HC4-type RING finger) family protein (HF=1e-7)
Module size 6 genes
NF 0.33
%ile 57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.93PtpAffx.17660.2.S1_s_atCV233145hypothetical protein-1e-7At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5078.60.95Ptp.148.1.S1_atCV225595hypothetical protein-4e-35At3g55380UBC14 (ubiquitin-conjugating enzyme 14)O.I.H.G.S.X.
0.3357.50.93Ptp.1266.1.S1_a_atCV252807hypothetical protein-2e-31At3g55380UBC14 (ubiquitin-conjugating enzyme 14)O.I.H.G.S.X.
0.2645.20.94Ptp.6308.1.S1_atCV229172hypothetical protein-1e-10At3g15340PPI2 (proton pump interactor 2)O.I.H.G.S.X.
0.2441.80.94PtpAffx.97277.1.S1_atCV262016hypothetical protein-8e-38At5g51450RIN3 (RPM1 INTERACTING PROTEIN 3)O.I.H.G.S.X.
0.1932.70.94PtpAffx.22410.1.S1_atCV272742hypothetical protein-5e-29At3g02290zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.785.5GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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