Co-expression analysis

Gene ID	PtpAffx.1761.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g75380: wound-responsive protein-related (HF=5e-2)
Module size	9 genes
NF	0.26
%ile	46.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	75.4	0.88	PtpAffx.1761.2.S1_at	DN484457	hypothetical protein	-	5e-2	At1g75380	wound-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.9234.1.A1_s_at	BI122577	hypothetical protein	-	9e-3	At5g18140	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.91	PtpAffx.32068.1.S1_s_at	CV260347	hypothetical protein	-	2e-9	At2g36630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	PtpAffx.160561.1.A1_at	CV228812	-	-	3e+0	At3g57760	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.92	PtpAffx.17383.2.A1_s_at	CV283276	hypothetical protein	-	8e-12	At2g45740	PEX11D	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.93	Ptp.2093.1.S1_at	CV277161	hypothetical protein	-	2e-34	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.91	PtpAffx.1259.1.S1_s_at	CV272573	hypothetical protein	-	4e-1	At3g12410	3'-5' exonuclease/ nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	Ptp.5103.1.S1_s_at	BU874135	hypothetical protein	-	2e-37	At4g01100	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.90	PtpAffx.249.148.A1_a_at	CV230214	hypothetical protein	-	1e-15	At2g44360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	90.9	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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