Co-expression analysis

Gene ID	PtpAffx.17228.2.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g09840: ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) (HF=1e-160)
Module size	6 genes
NF	0.75
%ile	97.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.96	PtpAffx.17228.2.S1_a_at	CV261896	hypothetical protein	-	1e-160	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.95	PtpAffx.31053.1.A1_s_at	CV246650	hypothetical protein	-	8e-40	At5g54760	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.249.28.A1_s_at	CK318136	-	-	3e-36	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.61485.1.A1_s_at	BP931704	-	-	4e-2	At2g22055	RALFL15 (RALF-LIKE 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	Ptp.4916.2.S1_s_at	CV270963	hypothetical protein	-	5e-84	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.1476.1.S1_s_at	CV265783	hypothetical protein	-	5e-35	At2g25310	carbohydrate binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	91.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage