Co-expression analysis

Gene ID PtpAffx.172.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g14040: mitochondrial phosphate transporter (HF=3e-5)
Module size 6 genes
NF 0.31
%ile 55.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.90PtpAffx.172.2.S1_atCK094032--3e-5At5g14040mitochondrial phosphate transporterO.I.H.G.S.X.
0.5078.60.90PtpAffx.655.1.A1_atCV237213hypothetical protein-5e-20At5g42760-O.I.H.G.S.X.
0.3863.70.91PtpAffx.222497.1.S1_s_atpmrna39966mitochondrial phosphate carrier protein-3e-17At2g17270mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3661.60.90PtpAffx.207759.1.S1_atpmrna15437hypothetical protein-4e-3At4g22420-O.I.H.G.S.X.
0.2238.30.90PtpAffx.65081.1.S1_atCK095257hypothetical protein-2e-5At5g57610protein kinase family proteinO.I.H.G.S.X.
0.1118.10.90PtpAffx.93051.1.S1_s_atDN500871hypothetical protein-2e+0At4g25210transcription regulatorO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.399.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
7.098.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.297.6GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.996.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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