Co-expression analysis

Gene ID	PtpAffx.16901.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g57780: - (HF=1e-11)
Module size	6 genes
NF	0.07
%ile	16.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.91	PtpAffx.16901.1.S1_at	CX660057	hypothetical protein	-	1e-11	At3g57780	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	Ptp.2019.1.A1_at	CK087637	hypothetical protein	-	2e+0	At5g55170	SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.4086.1.S1_at	CV264875	hypothetical protein	-	8e-20	At1g51630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.93	PtpAffx.8674.3.S1_at	CK096938	hypothetical protein	-	8e-8	At2g33510	protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.93	Ptp.5790.1.S1_s_at	CV253882	hypothetical protein	-	8e-57	At5g60920	COB (COBRA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.91	PtpAffx.12263.1.A1_s_at	CV263163	2-oxoglutarate/malate translocator	-	8e-44	At5g12860	DiT1 (dicarboxylate transporter 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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