Co-expression analysis

Gene ID	PtpAffx.1672.2.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g37040: pal1 (Phe ammonia lyase 1) (HF=8e-24)
Module size	6 genes
NF	0.23
%ile	41.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.92	PtpAffx.1672.2.A1_x_at	AF480619.1	-	-	8e-24	At2g37040	pal1 (Phe ammonia lyase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.37081.1.A1_at	CV261932	chromatin remodeling complex subunit	-	4e-39	At1g61140	EDA16 (embryo sac development arrest 16)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	PtpAffx.57272.1.A1_at	CV232571	-	-	4e-12	At2g17990	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	PtpAffx.30758.1.S1_at	CK091658	hypothetical protein	-	2e+0	At2g03160	ASK19 (ARABIDOPSIS SKP1-LIKE 19)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	PtpAffx.1454.1.S1_a_at	CV255184	hypothetical protein	-	4e-9	At3g08505	zinc finger (CCCH-type/C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.93	Ptp.3320.1.S1_s_at	DN492124	hypothetical protein	-	6e-7	At1g69460	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	93.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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