Co-expression analysis

Gene ID	PtpAffx.16691.2.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g51970: sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative (HF=2e-8)
Module size	6 genes
NF	0.42
%ile	70.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.93	PtpAffx.16691.2.S1_a_at	CV272539	hypothetical protein	-	2e-8	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.24328.3.A1_a_at	CV242876	hypothetical protein	-	1e-10	At2g17770	ATBZIP27	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	Ptp.907.1.A1_at	CV277484	hypothetical protein	-	4e-32	At4g19160	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.138367.1.S1_s_at	DN500998	hypothetical protein	-	9e-14	At3g03310	lecithin:cholesterol acyltransferase family protein / LACT family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	PtpAffx.79594.1.S1_s_at	CK098523	hypothetical protein	-	2e-20	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.93	PtpAffx.213041.1.S1_x_at	pmrna25522	hypothetical protein	-	4e-6	At4g25390	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.5	99.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.2	96.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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