Co-expression analysis

Gene ID	PtpAffx.16423.1.S1_at
Gene name	oligopeptide transporter OPT family
Homology with Arabidopsis	Similar to At5g53550: YSL3 (YELLOW STRIPE LIKE 3) (HF=3e-10)
Module size	11 genes
NF	0.63
%ile	92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	75.4	0.92	PtpAffx.16423.1.S1_at	CV262996	oligopeptide transporter OPT family	-	3e-10	At5g53550	YSL3 (YELLOW STRIPE LIKE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.93	PtpAffx.1601.1.S1_x_at	AJ779505	hypothetical protein	-	4e-19	At3g09390	MT2A (METALLOTHIONEIN 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	0.95	PtpAffx.1601.1.S1_at	AJ779505	hypothetical protein	-	4e-19	At3g09390	MT2A (METALLOTHIONEIN 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.84	97.1	0.96	PtpAffx.4943.1.A1_a_at	CV264273	-	-	9e-2	At2g03420	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.96	PtpAffx.47448.1.S1_a_at	BU813532	hypothetical protein	-	4e-2	At5g45660	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.30743.1.A1_a_at	CV268894	hypothetical protein	-	4e-1	At3g22110	PAC1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.101654.1.A1_at	CV256303	hypothetical protein	-	1e-1	At1g10155	ATPP2-A10 (PHLOEM PROTEIN 2-A10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.94	PtpAffx.220806.1.S1_at	pmrna37246	hypothetical protein	-	8e-2	At3g50120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	PtpAffx.249.102.A1_x_at	CX178961	-	-	2e-2	At1g76930	ATEXT4 (EXTENSIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.97	PtpAffx.64618.1.S1_at	CV271300	hypothetical protein	-	1e-8	At4g16190	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.94	PtpAffx.23759.1.S1_at	CX173491	-	-	1e-9	At2g22660	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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