Co-expression analysis

Gene ID PtpAffx.163145.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g39870: - (HF=3e-5)
Module size 6 genes
NF 0.38
%ile 65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95PtpAffx.163145.1.S1_atBU871945hypothetical protein-3e-5At4g39870-O.I.H.G.S.X.
0.4471.90.96PtpAffx.200889.1.S1_atpmrna1745hypothetical protein-3e-9At5g13530KEG (KEEP ON GOING)O.I.H.G.S.X.
0.3863.70.96PtpAffx.124368.1.S1_atCN517633hypothetical protein-9e-21At1g18470zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3559.70.95PtpAffx.225050.1.S1_atpmrna44127hypothetical protein-4e-112At4g32850nPAP (NUCLEAR POLY(A) POLYMERASE)O.I.H.G.S.X.
0.3357.50.96PtpAffx.206759.1.S1_atpmrna13417hypothetical protein-1e-12At2g25640zinc ion bindingO.I.H.G.S.X.
0.2034.60.95PtpAffx.151141.1.S1_atCB240339hypothetical protein-2e-37At1g54490XRN4 (EXORIBONUCLEASE 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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