CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.163113.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4)

Module size 6 genes

NF 0.73

%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 82.2 0.97 PtpAffx.163113.1.S1_s_at CX182719 hypothetical protein - 2e-4 At3g03330 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.80 96.0 0.97 PtpAffx.93043.1.S1_at CX178086 hypothetical protein - 4e-4 At1g29800 phosphoinositide binding / zinc ion binding O.I. H.G. S.X.
0.80 96.0 0.97 PtpAffx.23095.1.S1_at CX177404 hypothetical protein - 1e-3 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) O.I. H.G. S.X.
0.73 93.6 0.97 PtpAffx.72383.1.S1_at BU888356 - - 2e+0 At4g24265 unknown protein O.I. H.G. S.X.
0.71 92.6 0.97 Ptp.4562.1.S1_s_at CV261348 hypothetical protein - 1e-20 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) O.I. H.G. S.X.
0.56 83.9 0.97 PtpAffx.95687.1.A1_at DN496546 hypothetical protein - 4e-4 At2g25010 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.55	82.2	0.97	PtpAffx.163113.1.S1_s_at	CX182719	hypothetical protein	-	2e-4	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.80	96.0	0.97	PtpAffx.93043.1.S1_at	CX178086	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.
0.80	96.0	0.97	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.
0.73	93.6	0.97	PtpAffx.72383.1.S1_at	BU888356	-	-	2e+0	At4g24265	unknown protein	O.I.	H.G.	S.X.
0.71	92.6	0.97	Ptp.4562.1.S1_s_at	CV261348	hypothetical protein	-	1e-20	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.
0.56	83.9	0.97	PtpAffx.95687.1.A1_at	DN496546	hypothetical protein	-	4e-4	At2g25010	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	94.9	0.94	PtpAffx.137124.1.S1_s_at	BU878372	hypothetical protein	-	3e-23	At3g48820	glycosyl transferase family 29 protein / sialyltransferase family protein	O.I.	H.G.	S.X.
0.71	92.6	0.95	PtpAffx.31300.1.S1_at	CV240962	hypothetical protein	-	2e-36	At5g06140	SNX1 (SORTING NEXIN 1)	O.I.	H.G.	S.X.
0.57	84.2	0.95	PtpAffx.163467.1.S1_s_at	BU823164	histone deacetylase	-	6e-24	At3g44680	HDA9 (HISTONE DEACETYLASE 9)	O.I.	H.G.	S.X.
0.55	82.2	0.95	PtpAffx.209389.1.S1_at	pmrna18596	hypothetical protein	-	3e-13	At5g60410	SIZ1	O.I.	H.G.	S.X.
0.53	80.5	0.94	PtpAffx.87901.1.A1_at	CV244653	hypothetical protein	-	1e-25	At2g11000	ATMAK10	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.108604.1.A1_at	CV233919	hypothetical protein	-	9e-18	At5g15170	tyrosyl-DNA phosphodiesterase-related	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.203902.1.S1_at	pmrna7707	hypothetical protein	-	3e-68	At4g17020	transcription factor-related	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.159110.1.S1_at	CX170606	hypothetical protein	-	2e-30	At1g04140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.50	78.6	0.97	PtpAffx.158776.1.S1_s_at	CX168578	hypothetical protein	-	1e+0	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.
0.46	73.7	0.96	PtpAffx.119964.1.S1_s_at	CN521156	hypothetical protein	-	7e-10	At2g41060	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.44	71.9	0.95	PtpAffx.47649.1.S1_at	AJ777219	hypothetical protein	-	3e-10	At1g71840	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.44	71.9	0.97	PtpAffx.217914.1.S1_at	pmrna33367	hypothetical protein	-	1e-47	At5g15400	U-box domain-containing protein	O.I.	H.G.	S.X.
0.44	71.9	0.96	PtpAffx.81408.1.S1_s_at	CX173409	hypothetical protein	-	7e-12	At3g12940	unknown protein	O.I.	H.G.	S.X.
0.42	68.6	0.95	PtpAffx.148735.1.S1_s_at	BU824531	hypothetical protein	-	5e-9	At4g17020	transcription factor-related	O.I.	H.G.	S.X.
0.40	67.0	0.94	PtpAffx.135771.1.S1_at	CK103553	hypothetical protein	-	5e-12	At1g31120	KUP10	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.214221.1.S1_at	pmrna27670	hypothetical protein	-	1e-6	At4g32050	neurochondrin family protein	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.71505.1.A1_at	CK091850	hypothetical protein	-	2e+0	At1g50870	F-box family protein	O.I.	H.G.	S.X.
0.36	61.6	0.94	PtpAffx.222791.1.S1_s_at	pmrna40447	hypothetical protein	-	2e-15	At5g55810	AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.88987.1.A1_s_at	CV243168	hypothetical protein	-	5e-3	At1g67170	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.219812.1.S1_at	pmrna35931	hypothetical protein	-	1e-23	At3g10010	DML2 (DEMETER-LIKE 2)	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.213987.1.S1_at	pmrna27254	hypothetical protein	-	4e-73	At5g15540	EMB2773 (EMBRYO DEFECTIVE 2773)	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.91663.1.S1_a_at	DN490923	hypothetical protein	-	3e-36	At1g09920	TRAF-type zinc finger-related	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.24293.2.A1_at	AJ769717	hypothetical protein	-	3e-15	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.217501.1.S1_s_at	pmrna32788	hypothetical protein	-	8e-7	At1g22540	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.
0.35	59.7	0.94	PtpAffx.207672.1.S1_at	pmrna15230	hypothetical protein	-	2e-9	At1g28060	small nuclear ribonucleoprotein family protein / snRNP family protein	O.I.	H.G.	S.X.
0.35	59.7	0.96	PtpAffx.205812.1.S1_at	pmrna11490	hypothetical protein	-	3e-38	At4g16310	LDL3 (LSD1-LIKE3)	O.I.	H.G.	S.X.
0.33	57.5	0.94	PtpAffx.33535.3.S1_at	BU883003	hypothetical protein	-	2e-5	At2g16430	PAP10 (PURPLE ACID PHOSPHATASE 10)	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.207851.1.S1_at	pmrna15586	hypothetical protein	-	1e-27	At3g19895	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.95	Ptp.751.2.S1_at	AI164676	hypothetical protein	-	2e-5	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.201342.1.S1_at	pmrna2659	hypothetical protein	-	1e-92	At1g17110	UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15)	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.13770.1.S1_s_at	BI139343	hypothetical protein	-	1e-18	At5g19130	GPI transamidase component family protein / Gaa1-like family protein	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.158765.1.S1_at	CN519725	hypothetical protein	-	2e-6	At3g52950	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.13366.1.S1_at	AJ768061	10-formyltetrahydrofolate synthetase /// 10-formyltetrahydrofolate synthetase	-	4e-41	At1g50480	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)	O.I.	H.G.	S.X.
0.33	57.5	0.97	PtpAffx.3064.1.S1_s_at	BU882016	hypothetical protein	-	1e-85	At5g66680	DGL1	O.I.	H.G.	S.X.
0.32	55.2	0.93	PtpAffx.214140.1.S1_at	pmrna27513	hypothetical protein	-	6e-52	At5g11560	catalytic	O.I.	H.G.	S.X.
0.32	55.2	0.95	PtpAffx.150651.1.S1_at	BU820333	hypothetical protein	-	9e-17	At1g04950	TAF6 (TBP-ASSOCIATED FACTOR 6)	O.I.	H.G.	S.X.
0.32	55.2	0.95	PtpAffx.111490.2.S1_a_at	CX186416	hypothetical protein	-	3e-10	At4g00550	DGD2	O.I.	H.G.	S.X.
0.32	55.2	0.96	PtpAffx.12089.2.A1_a_at	CK091083	hypothetical protein	-	1e-47	At1g19710	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.
0.32	55.2	0.96	PtpAffx.1056.1.S1_at	AJ779404	hypothetical protein	-	1e-88	At4g33950	OST1 (OPEN STOMATA 1)	O.I.	H.G.	S.X.
0.32	55.2	0.96	PtpAffx.124525.1.S1_s_at	BU880856	hypothetical protein	-	1e-34	At2g28390	SAND family protein	O.I.	H.G.	S.X.
0.31	53.7	0.95	PtpAffx.204390.1.S1_at	pmrna8619	hypothetical protein	-	4e-11	At1g08310	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.
0.30	52.0	0.96	PtpAffx.53090.1.S1_at	CK096004	hypothetical protein	-	7e-32	At5g12040	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.
0.30	52.0	0.96	PtpAffx.141519.1.S1_at	AJ774599	hypothetical protein	-	2e-120	At5g64070	PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.210973.1.S1_at	pmrna21559	hypothetical protein	-	2e-109	At5g28080	WNK9	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.26053.1.A1_s_at	CK116912	hypothetical protein	-	7e-6	At4g09640	-	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.205864.1.S1_s_at	pmrna11626	hypothetical protein	-	3e-114	At4g35230	BSK1 (BR-SIGNALING KINASE 1)	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.157124.1.S1_at	CK106225	hypothetical protein	-	3e-11	At5g51340	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.203451.1.S1_at	pmrna6871	hypothetical protein	-	5e-9	At1g04790	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.135342.1.S1_at	CN550200	hypothetical protein	-	2e-40	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.29	50.5	0.97	PtpAffx.144348.2.S1_at	CF229054	hypothetical protein	-	6e-20	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
10.4	99.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.163113.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4)
Module size	6 genes
NF	0.73
%ile	97.5

Co-expression analysis

Gene ID PtpAffx.163113.1.S1_s_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4) Module size 6 genes NF 0.73 %ile 97.5

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.163113.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4)

Module size 6 genes

NF 0.73

%ile 97.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays