CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.163113.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4)

Module size 6 genes

NF 0.73

%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 82.2 0.97 PtpAffx.163113.1.S1_s_at CX182719 hypothetical protein - 2e-4 At3g03330 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.80 96.0 0.97 PtpAffx.93043.1.S1_at CX178086 hypothetical protein - 4e-4 At1g29800 phosphoinositide binding / zinc ion binding O.I. H.G. S.X.
0.80 96.0 0.97 PtpAffx.23095.1.S1_at CX177404 hypothetical protein - 1e-3 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) O.I. H.G. S.X.
0.73 93.6 0.97 PtpAffx.72383.1.S1_at BU888356 - - 2e+0 At4g24265 unknown protein O.I. H.G. S.X.
0.71 92.6 0.97 Ptp.4562.1.S1_s_at CV261348 hypothetical protein - 1e-20 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) O.I. H.G. S.X.
0.56 83.9 0.97 PtpAffx.95687.1.A1_at DN496546 hypothetical protein - 4e-4 At2g25010 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

A co-expression module including the maize gene, Zm.5851.2.A1_at, orthologous to the query gene, PtpAffx.163113.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.8 Zm.5851.2.A1_at At3g03330 hypothetical protein LOC100278946 - 4e-1 At3g28220 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.44 55.7 Zm.4301.1.A1_at At3g03330 hypothetical protein LOC100274567 - 2e+0 At1g44750 ATPUP11 O.I. H.G. S.X.
0.40 48.5 Zm.7107.1.S1_at At3g03330 RNA-binding protein 25 - 4e-2 At5g19960 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.30 29.8 Zm.90.1.A1_a_at At3g03330 - - 4e+0 At5g26070 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.29 28.1 Zm.7011.1.S1_s_at At3g03330 hypothetical protein LOC100191203 - 3e-19 At4g21110 G10 family protein O.I. H.G. S.X.
0.27 24.6 Zm.12879.1.S1_at At3g03330 salt-inducible protein kinase - 5e-26 At2g35050 protein kinase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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