CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.163113.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4)

Module size 6 genes

NF 0.73

%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 82.2 0.97 PtpAffx.163113.1.S1_s_at CX182719 hypothetical protein - 2e-4 At3g03330 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.80 96.0 0.97 PtpAffx.93043.1.S1_at CX178086 hypothetical protein - 4e-4 At1g29800 phosphoinositide binding / zinc ion binding O.I. H.G. S.X.
0.80 96.0 0.97 PtpAffx.23095.1.S1_at CX177404 hypothetical protein - 1e-3 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) O.I. H.G. S.X.
0.73 93.6 0.97 PtpAffx.72383.1.S1_at BU888356 - - 2e+0 At4g24265 unknown protein O.I. H.G. S.X.
0.71 92.6 0.97 Ptp.4562.1.S1_s_at CV261348 hypothetical protein - 1e-20 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) O.I. H.G. S.X.
0.56 83.9 0.97 PtpAffx.95687.1.A1_at DN496546 hypothetical protein - 4e-4 At2g25010 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

A co-expression module including the grape gene, 1618639_at, orthologous to the query gene, PtpAffx.163113.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 1618639_at At3g03330 hypothetical protein LOC100247868 - 4e+0 At5g53742 - O.I. H.G. S.X.
0.38 53.6 1609899_at At3g03330 similar to mitochondrial 28S ribosomal protein S29-related - 3e-34 At1g16870 mitochondrial 28S ribosomal protein S29-related O.I. H.G. S.X.
0.36 50.7 1609200_at At3g03330 hypothetical protein LOC100263325 - 7e-49 At2g20280 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.21 24.0 1610019_at At3g03330 hypothetical protein LOC100250847 - 2e-1 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) O.I. H.G. S.X.
0.20 22.4 1611832_at At3g03330 - - 3e-3 At1g31660 - O.I. H.G. S.X.
0.15 15.6 1616909_at At3g03330 similar to oxysterol-binding family protein - 5e-32 At5g59420 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C) O.I. H.G. S.X.
0.13 13.3 1613310_at At3g03330 hypothetical protein LOC100246079 - 2e+1 At5g48605 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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