CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.163113.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4)

Module size 6 genes

NF 0.73

%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 82.2 0.97 PtpAffx.163113.1.S1_s_at CX182719 hypothetical protein - 2e-4 At3g03330 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.80 96.0 0.97 PtpAffx.93043.1.S1_at CX178086 hypothetical protein - 4e-4 At1g29800 phosphoinositide binding / zinc ion binding O.I. H.G. S.X.
0.80 96.0 0.97 PtpAffx.23095.1.S1_at CX177404 hypothetical protein - 1e-3 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) O.I. H.G. S.X.
0.73 93.6 0.97 PtpAffx.72383.1.S1_at BU888356 - - 2e+0 At4g24265 unknown protein O.I. H.G. S.X.
0.71 92.6 0.97 Ptp.4562.1.S1_s_at CV261348 hypothetical protein - 1e-20 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) O.I. H.G. S.X.
0.56 83.9 0.97 PtpAffx.95687.1.A1_at DN496546 hypothetical protein - 4e-4 At2g25010 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.55	82.2	0.97	PtpAffx.163113.1.S1_s_at	CX182719	hypothetical protein	-	2e-4	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.80	96.0	0.97	PtpAffx.93043.1.S1_at	CX178086	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.
0.80	96.0	0.97	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.
0.73	93.6	0.97	PtpAffx.72383.1.S1_at	BU888356	-	-	2e+0	At4g24265	unknown protein	O.I.	H.G.	S.X.
0.71	92.6	0.97	Ptp.4562.1.S1_s_at	CV261348	hypothetical protein	-	1e-20	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.
0.56	83.9	0.97	PtpAffx.95687.1.A1_at	DN496546	hypothetical protein	-	4e-4	At2g25010	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
10.4	99.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

A co-expression module including the rice gene, Os11g0265400, orthologous to the query gene, PtpAffx.163113.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 Os11g0265400 At3g03330 - Short-chain dehydrogenase/reductase SDR familyprotein 5e-8 At3g03330 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.44 58.1 Os09g0535300 At3g03330 - XAP5 protein family protein 1e-67 At2g21150 XCT (XAP5 CIRCADIAN TIMEKEEPER) O.I. H.G. S.X.
0.43 55.4 Os07g0531600 At3g03330 - Phospholipid/glycerol acyltransferase familyprotein 4e-18 At5g60620 phospholipid/glycerol acyltransferase family protein O.I. H.G. S.X.
0.42 53.9 Os05g0446300 At3g03330 - G10 protein homolog 2e-12 At4g21110 G10 family protein O.I. H.G. S.X.
0.42 53.9 Os01g0214300 At3g03330 - Hypothetical protein 3e-4 At1g17790 DNA-binding bromodomain-containing protein O.I. H.G. S.X.
0.41 52.4 Os04g0195000 At3g03330 - Vacuolar assembly protein VPS41 homolog 2e-24 At1g08190 vacuolar assembly protein, putative (VPS41) O.I. H.G. S.X.
0.32 36.3 Os07g0252000 At3g03330 - WD40-like domain containing protein 1e-2 At2g26060 emb1345 (embryo defective 1345) O.I. H.G. S.X.
0.30 32.7 Os02g0776700 At3g03330 - Myb, DNA-binding domain containing protein 1e+0 At1g72650 TRFL6 (TRF-LIKE 6) O.I. H.G. S.X.
0.29 31.1 Os03g0223700 At3g03330 - ARM repeat fold domain containing protein 2e-49 At2g01690 binding O.I. H.G. S.X.
0.29 31.1 Os01g0813500 At3g03330 - Vacuolar protein sorting 36 family protein 4e-3 At5g04920 vacuolar protein sorting 36 family protein / VPS36 family protein O.I. H.G. S.X.
0.28 31.1 Os01g0172000 At3g03330 - Hypothetical protein 6e-5 At2g47760 ALG3 O.I. H.G. S.X.
0.26 25.6 Os09g0515800 At3g03330 - RabGAP/TBC domain containing protein 3e-19 At2g30710 RabGAP/TBC domain-containing protein O.I. H.G. S.X.
0.23 21.2 Os02g0832700 At3g03330 - Cation efflux protein family protein 2e-16 At3g12100 cation efflux family protein / metal tolerance protein, putative O.I. H.G. S.X.
0.22 19.4 Os08g0537800 At3g03330 - The start codon is not identified. 4e-2 At2g37600 60S ribosomal protein L36 (RPL36A) O.I. H.G. S.X.
0.22 19.4 Os07g0639800 At3g03330 - - 3e-33 At3g55620 emb1624 (embryo defective 1624) O.I. H.G. S.X.
0.20 16.5 Os03g0786800 At3g03330 - The start codon is not identified. 4e-54 At5g46210 CUL4 (CULLIN4) O.I. H.G. S.X.
0.19 15.1 Os12g0165000 At3g03330 - WD40-like domain containing protein 3e+0 At3g05090 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.19 15.1 Os01g0857700 At3g03330 - Cell cycle control protein cwf14 2e-19 At4g21110 G10 family protein O.I. H.G. S.X.
0.18 13.7 Os07g0495900 At3g03330 - Regulator of nonsense transcripts 1 homolog 1e-6 At5g47010 LBA1 (LOW-LEVEL BETA-AMYLASE 1) O.I. H.G. S.X.
0.16 11.3 Os11g0433200 At3g03330 - Peptidase A22B, minor histocompatibility antigenH13 family protein 5e-3 At1g01650 aspartic-type endopeptidase/ peptidase O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	91.1	Os11g0265400	At3g03330	-	Short-chain dehydrogenase/reductase SDR familyprotein	5e-8	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.44	58.1	Os09g0535300	At3g03330	-	XAP5 protein family protein	1e-67	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	O.I.	H.G.	S.X.
0.43	55.4	Os07g0531600	At3g03330	-	Phospholipid/glycerol acyltransferase familyprotein	4e-18	At5g60620	phospholipid/glycerol acyltransferase family protein	O.I.	H.G.	S.X.
0.42	53.9	Os05g0446300	At3g03330	-	G10 protein homolog	2e-12	At4g21110	G10 family protein	O.I.	H.G.	S.X.
0.42	53.9	Os01g0214300	At3g03330	-	Hypothetical protein	3e-4	At1g17790	DNA-binding bromodomain-containing protein	O.I.	H.G.	S.X.
0.41	52.4	Os04g0195000	At3g03330	-	Vacuolar assembly protein VPS41 homolog	2e-24	At1g08190	vacuolar assembly protein, putative (VPS41)	O.I.	H.G.	S.X.
0.32	36.3	Os07g0252000	At3g03330	-	WD40-like domain containing protein	1e-2	At2g26060	emb1345 (embryo defective 1345)	O.I.	H.G.	S.X.
0.30	32.7	Os02g0776700	At3g03330	-	Myb, DNA-binding domain containing protein	1e+0	At1g72650	TRFL6 (TRF-LIKE 6)	O.I.	H.G.	S.X.
0.29	31.1	Os03g0223700	At3g03330	-	ARM repeat fold domain containing protein	2e-49	At2g01690	binding	O.I.	H.G.	S.X.
0.29	31.1	Os01g0813500	At3g03330	-	Vacuolar protein sorting 36 family protein	4e-3	At5g04920	vacuolar protein sorting 36 family protein / VPS36 family protein	O.I.	H.G.	S.X.
0.28	31.1	Os01g0172000	At3g03330	-	Hypothetical protein	6e-5	At2g47760	ALG3	O.I.	H.G.	S.X.
0.26	25.6	Os09g0515800	At3g03330	-	RabGAP/TBC domain containing protein	3e-19	At2g30710	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.
0.23	21.2	Os02g0832700	At3g03330	-	Cation efflux protein family protein	2e-16	At3g12100	cation efflux family protein / metal tolerance protein, putative	O.I.	H.G.	S.X.
0.22	19.4	Os08g0537800	At3g03330	-	The start codon is not identified.	4e-2	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.
0.22	19.4	Os07g0639800	At3g03330	-	-	3e-33	At3g55620	emb1624 (embryo defective 1624)	O.I.	H.G.	S.X.
0.20	16.5	Os03g0786800	At3g03330	-	The start codon is not identified.	4e-54	At5g46210	CUL4 (CULLIN4)	O.I.	H.G.	S.X.
0.19	15.1	Os12g0165000	At3g03330	-	WD40-like domain containing protein	3e+0	At3g05090	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.19	15.1	Os01g0857700	At3g03330	-	Cell cycle control protein cwf14	2e-19	At4g21110	G10 family protein	O.I.	H.G.	S.X.
0.18	13.7	Os07g0495900	At3g03330	-	Regulator of nonsense transcripts 1 homolog	1e-6	At5g47010	LBA1 (LOW-LEVEL BETA-AMYLASE 1)	O.I.	H.G.	S.X.
0.16	11.3	Os11g0433200	At3g03330	-	Peptidase A22B, minor histocompatibility antigenH13 family protein	5e-3	At1g01650	aspartic-type endopeptidase/ peptidase	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	PtpAffx.163113.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4)
Module size	6 genes
NF	0.73
%ile	97.5

Co-expression analysis

Gene ID PtpAffx.163113.1.S1_s_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4) Module size 6 genes NF 0.73 %ile 97.5

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.163113.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4)

Module size 6 genes

NF 0.73

%ile 97.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays