Co-expression analysis

Gene ID	PtpAffx.163113.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g03330: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-4)
Module size	6 genes
NF	0.73
%ile	97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.97	PtpAffx.163113.1.S1_s_at	CX182719	hypothetical protein	-	2e-4	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.97	PtpAffx.93043.1.S1_at	CX178086	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.97	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.97	PtpAffx.72383.1.S1_at	BU888356	-	-	2e+0	At4g24265	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.97	Ptp.4562.1.S1_s_at	CV261348	hypothetical protein	-	1e-20	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.97	PtpAffx.95687.1.A1_at	DN496546	hypothetical protein	-	4e-4	At2g25010	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

A co-expression module including the soybean gene, Gma.980.1.S1_at, orthologous to the query gene, PtpAffx.163113.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	91.7	Gma.980.1.S1_at	At3g03330	-	-	3e-23	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.70	87.1	GmaAffx.91954.1.S1_s_at	At3g03330	-	-	2e-11	At4g15940	fumarylacetoacetate hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.68	86.4	GmaAffx.90735.1.S1_s_at	At3g03330	-	-	1e-28	At3g02420	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	Gma.17742.1.S1_at	At3g03330	-	-	1e-12	At4g29330	DER1 (DERLIN-1)	O.I.	H.G.	S.X.	Please select
0.64	83.4	GmaAffx.88721.1.S1_s_at	At3g03330	-	-	5e-12	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select
0.63	82.9	Gma.14954.1.S1_at	At3g03330	-	-	5e-13	At3g05070	-	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.59019.1.S1_at	At3g03330	-	-	1e-136	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.61	81.8	Gma.4707.3.S1_s_at	At3g03330	-	-	4e-68	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.60	80.7	Gma.17047.1.S1_x_at	At3g03330	-	-	6e+0	At4g03290	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.57	78.8	GmaAffx.84576.1.S1_s_at	At3g03330	-	-	9e-1	At1g22790	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	Gma.11202.1.S1_s_at	At3g03330	-	-	3e-20	At1g27310	NTF2A (NUCLEAR TRANSPORT FACTOR 2A)	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.4344.2.S1_a_at	At3g03330	-	-	1e-79	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.17047.1.S1_s_at	At3g03330	-	-	6e+0	At4g03290	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.92910.1.S1_s_at	At3g03330	-	-	2e-45	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.91569.1.S1_s_at	At3g03330	-	-	7e-52	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.52	73.1	Gma.5810.2.S1_a_at	At3g03330	-	-	2e-79	At3g26340	20S proteasome beta subunit E, putative	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.90062.1.S1_s_at	At3g03330	-	-	1e-108	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.13142.2.S1_a_at	At3g03330	-	-	2e-13	At5g15220	ribosomal protein L27 family protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.17539.2.S1_s_at	At3g03330	proteasome IOTA subunit	-	1e-36	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.91720.1.S1_s_at	At3g03330	-	-	6e-12	At2g21870	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	GmaAffx.92455.1.S1_s_at	At3g03330	-	-	5e-34	At5g42790	PAF1	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.91235.1.S1_s_at	At3g03330	-	-	8e-45	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.6353.1.S1_at	At3g03330	-	-	1e-4	At1g67250	proteasome maturation factor UMP1 family protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.92081.1.S1_at	At3g03330	-	-	1e-3	At1g47420	-	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.93620.1.S1_s_at	At3g03330	-	-	3e-19	At3g61140	FUS6 (FUSCA 6)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.10826.5.S1_x_at	At3g03330	-	-	2e-108	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.8031.3.S1_a_at	At3g03330	-	-	8e-8	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.65487.1.S1_at	At3g03330	-	-	4e-28	At3g11270	MEE34 (maternal effect embryo arrest 34)	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.1729.2.S1_at	At3g03330	-	-	2e-42	At4g35410	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage