CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.162331.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g11640: ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) (HF=1e+0)

Module size 6 genes

NF 0.77

%ile 98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.92 PtpAffx.162331.1.S1_at CA821362 - - 1e+0 At4g11640 ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) O.I. H.G. S.X.
0.91 99.2 0.91 PtpAffx.209537.1.S1_at pmrna18896 hypothetical protein - 1e+0 At3g59250 F-box family protein O.I. H.G. S.X.
0.80 96.0 0.95 PtpAffx.200185.1.S1_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) O.I. H.G. S.X.
0.73 93.6 0.87 PtpAffx.21178.1.S1_at BU887045 hypothetical protein - 1e+0 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) O.I. H.G. S.X.
0.73 93.6 0.94 PtpAffx.127059.1.A1_at CV258719 hypothetical protein - 1e-4 At1g66270 BGLU21 O.I. H.G. S.X.
0.40 67.0 0.92 PtpAffx.212416.1.S1_at pmrna24321 hypothetical protein - 5e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.83	Ptp.7218.1.S1_at	CV273365	hypothetical protein	-	2e-5	At3g53980	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.60	86.0	0.88	PtpAffx.224455.1.S1_at	pmrna43009	hypothetical protein	-	1e-11	At1g08440	-	O.I.	H.G.	S.X.
0.53	80.5	0.88	PtpAffx.209537.1.S1_s_at	pmrna18896	hypothetical protein	-	1e+0	At3g59250	F-box family protein	O.I.	H.G.	S.X.
0.50	78.6	0.88	PtpAffx.225487.1.S1_at	pmrna44866	hypothetical protein	-	7e-1	At2g38360	PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)	O.I.	H.G.	S.X.
0.44	71.9	0.82	PtpAffx.202897.1.S1_at	pmrna5733	hypothetical protein	-	3e-6	At3g13980	unknown protein	O.I.	H.G.	S.X.
0.42	68.6	0.92	PtpAffx.162331.2.S1_at	AJ780051	-	-	1e+0	At4g11640	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	O.I.	H.G.	S.X.
0.40	67.0	0.86	PtpAffx.203475.1.S1_at	pmrna6918	hypothetical protein	-	5e-1	At4g09320	NDPK1	O.I.	H.G.	S.X.
0.40	67.0	0.90	PtpAffx.212416.1.S1_x_at	pmrna24321	hypothetical protein	-	5e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.
0.38	63.7	0.94	PtpAffx.17653.3.A1_at	CV242489	-	-	7e+0	Atmg01020	-	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.200185.1.S1_s_at	pmrna342	hypothetical protein	-	8e-4	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	O.I.	H.G.	S.X.
0.35	59.7	0.86	PtpAffx.56188.1.A1_at	CV274756	hypothetical protein	-	5e+0	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.63615.1.S1_at	DN491597	hypothetical protein	-	2e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	O.I.	H.G.	S.X.
0.29	50.5	0.87	PtpAffx.12427.2.S1_at	CV227991	-	-	1e-19	At4g04210	PUX4	O.I.	H.G.	S.X.
0.26	45.2	0.91	PtpAffx.158291.1.A1_at	BP931571	-	-	3e+0	At5g65320	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.25	43.6	0.90	Ptp.3670.1.S1_at	CV273865	hypothetical protein	-	5e-11	At4g08300	nodulin MtN21 family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.3 99.0 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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