CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.162331.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g11640: ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) (HF=1e+0)

Module size 6 genes

NF 0.77

%ile 98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.92 PtpAffx.162331.1.S1_at CA821362 - - 1e+0 At4g11640 ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) O.I. H.G. S.X.
0.91 99.2 0.91 PtpAffx.209537.1.S1_at pmrna18896 hypothetical protein - 1e+0 At3g59250 F-box family protein O.I. H.G. S.X.
0.80 96.0 0.95 PtpAffx.200185.1.S1_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) O.I. H.G. S.X.
0.73 93.6 0.87 PtpAffx.21178.1.S1_at BU887045 hypothetical protein - 1e+0 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) O.I. H.G. S.X.
0.73 93.6 0.94 PtpAffx.127059.1.A1_at CV258719 hypothetical protein - 1e-4 At1g66270 BGLU21 O.I. H.G. S.X.
0.40 67.0 0.92 PtpAffx.212416.1.S1_at pmrna24321 hypothetical protein - 5e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.3 99.0 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the grape gene, 1613968_at, orthologous to the query gene, PtpAffx.162331.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 83.2 1613968_at At4g11640 - - 1e-1 At1g70470 unknown protein O.I. H.G. S.X.
0.67 87.9 1609900_at At4g11640 hypothetical protein LOC100257911 /// hypothetical protein LOC100252759 /// hypothetical protein LOC100243166 - 5e-5 At3g03480 CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase) O.I. H.G. S.X.
0.67 87.9 1616632_at At4g11640 - - 4e+0 At3g51470 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.50 72.7 1608592_at At4g11640 - - 1e+0 At1g06200 serine-type peptidase O.I. H.G. S.X.
0.50 72.7 1620846_at At4g11640 - - 4e-5 At4g14420 lesion inducing protein-related O.I. H.G. S.X.
0.40 57.7 1622014_at At4g11640 hypothetical protein LOC100249487 - 2e-2 At1g76640 calmodulin-related protein, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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