Co-expression analysis

Gene ID	PtpAffx.162331.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g11640: ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) (HF=1e+0)
Module size	6 genes
NF	0.77
%ile	98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.92	PtpAffx.162331.1.S1_at	CA821362	-	-	1e+0	At4g11640	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.91	PtpAffx.209537.1.S1_at	pmrna18896	hypothetical protein	-	1e+0	At3g59250	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.95	PtpAffx.200185.1.S1_at	pmrna342	hypothetical protein	-	8e-4	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.87	PtpAffx.21178.1.S1_at	BU887045	hypothetical protein	-	1e+0	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.94	PtpAffx.127059.1.A1_at	CV258719	hypothetical protein	-	1e-4	At1g66270	BGLU21	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.212416.1.S1_at	pmrna24321	hypothetical protein	-	5e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.69371.1.A1_at, orthologous to the query gene, PtpAffx.162331.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.69371.1.A1_at	At4g11640	-	-	2e-1	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	O.I.	H.G.	S.X.	Please select
0.60	80.7	GmaAffx.70526.1.A1_at	At4g11640	-	-	7e-1	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.C1000091_at	At4g11640	-	-	4e-1	At2g21490	LEA (DEHYDRIN LEA)	O.I.	H.G.	S.X.	Please select
0.05	8.0	GmaAffx.14602.1.S1_at	At4g11640	-	-	2e-1	At3g45851	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.83815.1.S1_s_at	At4g11640	-	-	1e+0	At1g04330	unknown protein	O.I.	H.G.	S.X.	Please select
0.00	1.4	GmaAffx.90612.1.S1_at	At4g11640	-	-	2e-14	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage