Co-expression analysis

Gene ID PtpAffx.162331.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g11640: ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) (HF=1e+0)
Module size 6 genes
NF 0.77
%ile 98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.92PtpAffx.162331.1.S1_atCA821362--1e+0At4g11640ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)O.I.H.G.S.X.
0.9199.20.91PtpAffx.209537.1.S1_atpmrna18896hypothetical protein-1e+0At3g59250F-box family proteinO.I.H.G.S.X.
0.8096.00.95PtpAffx.200185.1.S1_atpmrna342hypothetical protein-8e-4At2g44450BGLU15 (BETA GLUCOSIDASE 15)O.I.H.G.S.X.
0.7393.60.87PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)O.I.H.G.S.X.
0.7393.60.94PtpAffx.127059.1.A1_atCV258719hypothetical protein-1e-4At1g66270BGLU21O.I.H.G.S.X.
0.4067.00.92PtpAffx.212416.1.S1_atpmrna24321hypothetical protein-5e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.399.0GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.796.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g11640, orthologous to the query gene, PtpAffx.162331.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At4g11640826769ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases.O.I.H.G.S.X.
0.3541.6At1g21570838758zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPOO.I.H.G.S.X.
0.3439.8At5g47360834783pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.3133.8At3g01130821228unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.2930.3At1g08390837359nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPO.I.H.G.S.X.
0.2726.2At1g70895843428CLE17 (CLAVATA3/ESR-RELATED 17)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.O.I.H.G.S.X.
0.2319.3At5g51910835266TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PO.I.H.G.S.X.
0.2319.3At1g02160839554-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO.I.H.G.S.X.
0.2115.8At3g62050825378-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO.I.H.G.S.X.
0.2115.8At4g23950828495-F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane;OMFBPO.I.H.G.S.X.
0.2115.8At1g65080842816OXA1 family proteinF:binding;P:protein insertion into membrane;C:membrane;BMFOPO.I.H.G.S.X.
0.2014.4At3g24315822020AtSec20F:molecular_function unknown;P:unknown;C:unknown;MFPOO.I.H.G.S.X.
0.1811.4At2g43260818928F-box family protein / S locus-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.1811.4At5g18590831977kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAVO.I.H.G.S.X.
0.1811.4At1g34150840314tRNA pseudouridine synthase family proteinF:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAPO.I.H.G.S.X.
0.1811.4At5g41850834190unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFO.I.H.G.S.X.
0.1710.2At3g18800821413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.H.G.S.X.
0.157.8At5g19570832077unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.146.8At1g067403766669transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.135.8At4g32970829434unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.H.G.S.X.
0.135.8At5g38730833864pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.135.8At2g46540819266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;PO.I.H.G.S.X.
0.135.8At3g62400825413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.135.8At3g25100822101CDC45 (cell division cycle 45)Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45O.I.H.G.S.X.
0.135.8At1g67690843094metalloendopeptidaseF:metalloendopeptidase activity;P:proteolysis;C:cellular_component unknown;BOFMPAO.I.H.G.S.X.
0.135.8At2g40720818667pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.135.8At4g29540829075bacterial transferase hexapeptide repeat-containing proteinF:acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, transferase activity;P:lipid biosynthetic process;C:unknown;BOAPFMVO.I.H.G.S.X.
0.124.9At5g05350830417unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFO.I.H.G.S.X.
0.124.9At1g62150842511mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:unknown;C:unknown;POMO.I.H.G.S.X.
0.124.9At4g18400827570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBFO.I.H.G.S.X.
0.124.9At5g19830832103aminoacyl-tRNA hydrolaseF:aminoacyl-tRNA hydrolase activity;P:translation;C:mitochondrion;BOPFMO.I.H.G.S.X.
0.114.1At5g04050830284-F:molecular_function unknown;P:RNA splicing;C:cellular_component unknown;BPOFMAO.I.H.G.S.X.
0.114.1At3g21740821728APO4 (ACCUMULATION OF PHOTOSYSTEM ONE 4)ACCUMULATION OF PHOTOSYSTEM ONE 4O.I.H.G.S.X.
0.114.1At2g35540818119DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BMOPFAO.I.H.G.S.X.
0.103.4At1g24240839038ribosomal protein L19 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMFO.I.H.G.S.X.
0.103.4At4g082203770291transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.103.4At2g18245816340unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.092.8At5g64600836581unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus, cytoplasm;PO.I.H.G.S.X.
0.092.8At4g25270828630pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBO.I.H.G.S.X.
0.092.8At4g33410829478signal peptide peptidase family proteinF:aspartic-type endopeptidase activity;P:biological_process unknown;C:endomembrane system, integral to membrane;MPOFO.I.H.G.S.X.
0.092.8At4g35910829746unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOAO.I.H.G.S.X.
0.082.3At5g48990834958kelch repeat-containing F-box family proteinencodes an F-box protein that interacts with SKP1 and likely to be involved in ubiquitin-mediated protein degradation.O.I.H.G.S.X.
0.082.3At3g47390823893cytidine/deoxycytidylate deaminase family proteinF:in 6 functions;P:riboflavin biosynthetic process;C:unknown;BOAFPMVO.I.H.G.S.X.
0.082.3At5g10620830927-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOAPO.I.H.G.S.X.
0.082.3At1g77360844072pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBAO.I.H.G.S.X.
0.082.3At3g45980823741HTB9Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.O.I.H.G.S.X.
0.082.3At5g14600831312tRNA (adenine-N1-)-methyltransferaseF:tRNA (adenine-N1-)-methyltransferase activity;P:tRNA methylation;C:cellular_component unknown;OBMAFPO.I.H.G.S.X.
0.071.9At1g02180839543ferredoxin-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.071.9At4g01990828172pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;POFMBO.I.H.G.S.X.
0.071.9At1g73100843641SUVH3 (SU(VAR)3-9 HOMOLOG 3)Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.O.I.H.G.S.X.
0.071.9At2g31340817692emb1381 (embryo defective 1381)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.H.G.S.X.
0.071.9At3g22670821838pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POFMBAO.I.H.G.S.X.
0.071.9At3g62450825418unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.071.9At5g66360836768ribosomal RNA adenine dimethylase family proteinF:rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity;P:rRNA modification;C:cellular_component unknown;BOMAFPO.I.H.G.S.X.
0.071.9At1g62720842570-F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.071.9At2g40935818692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMFOO.I.H.G.S.X.
0.071.9At1g79220844263mitochondrial transcription termination factor family protein / mTERF family proteinF:unknown;P:biological_process unknown;C:unknown;PMOO.I.H.G.S.X.
0.061.4At1g21840838786UREF (urease accessory protein F)Encodes a urease accessory protein which is essential for the activation of plant urease.O.I.H.G.S.X.
0.061.4At1g78790844215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.061.4At2g40150818606-F:unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.051.1At3g18380821367sequence-specific DNA binding / transcription factorF:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PO.I.H.G.S.X.
0.051.1At1g47720841183OSB1 (Organellar Single-stranded)Encodes an organellar single-strand DNA binding protein, located in mitochondria, controls the stoichiometry of alternative mitochondrial DNA forms generated by homologous recombination.O.I.H.G.S.X.
0.051.1At3g14080820624small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFPOAO.I.H.G.S.X.
0.051.1At1g09230837443RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPOFBVO.I.H.G.S.X.
0.051.1At4g17420827453-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAPFO.I.H.G.S.X.
0.040.9At2g32700817830WD-40 repeat family proteinEncodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.O.I.H.G.S.X.
0.040.9At1g7794084412960S ribosomal protein L30 (RPL30B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit;MOAFPBO.I.H.G.S.X.
0.040.9At4g15770827257RNA binding / protein bindingF:protein binding, RNA binding;P:ribosome assembly, ribosome biogenesis;C:nucleus;MFOPAO.I.H.G.S.X.
0.040.9At3g12180820395cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOO.I.H.G.S.X.
0.040.9At5g64350836556FKBP12 (FK506-BINDING PROTEIN)F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOFPAO.I.H.G.S.X.
0.040.9At5g38460833834ALG6, ALG8 glycosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:unknown;C:endoplasmic reticulum membrane;MFOPBO.I.H.G.S.X.
0.030.6At2g39550818540PGGT-Iencodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways.O.I.H.G.S.X.
0.020.4At1g31220840010phosphoribosylglycinamide formyltransferaseN10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamideO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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