Co-expression analysis

Gene ID PtpAffx.161948.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g27695: glycine-rich protein (HF=1e+0)
Module size 7 genes
NF 0.80
%ile 98.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.95PtpAffx.161948.1.A1_atCK092884hypothetical protein-1e+0At1g27695glycine-rich proteinO.I.H.G.S.X.
0.9299.30.96PtpAffx.19956.1.S1_atCK096932hypothetical protein-2e-17At5g65140trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.8397.00.96PtpAffx.27422.1.S1_atBU892225hypothetical protein-4e-4At1g0740017.8 kDa class I heat shock protein (HSP17.8-CI)O.I.H.G.S.X.
0.8096.00.94PtpAffx.27422.1.S1_x_atBU892225hypothetical protein-4e-4At1g0740017.8 kDa class I heat shock protein (HSP17.8-CI)O.I.H.G.S.X.
0.8096.00.95Ptp.3954.1.S1_a_atBP936963hypothetical protein-3e-52At1g64980unknown proteinO.I.H.G.S.X.
0.7794.90.95Ptp.7650.2.A1_atDN488603hypothetical protein-4e+0At3g20395protein binding / zinc ion bindingO.I.H.G.S.X.
0.6388.10.95PtpAffx.74927.2.S1_a_atCV244564hypothetical protein-7e-3At1g67100LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.196.8GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.696.2GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.684.5GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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