Co-expression analysis

Gene ID PtpAffx.16175.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g48209: - (HF=9e-1)
Module size 7 genes
NF 0.37
%ile 63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4673.70.86PtpAffx.16175.1.S1_atDN496213--9e-1At3g48209-O.I.H.G.S.X.
0.6187.00.90PtpAffx.207643.1.S1_atpmrna15162hypothetical protein-3e-1At3g57390AGL18O.I.H.G.S.X.
0.3661.60.90PtpAffx.202991.1.S1_atpmrna5919hypothetical protein-6e-1At3g04510LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)O.I.H.G.S.X.
0.3559.70.88PtpAffx.221219.1.S1_atpmrna37938hypothetical protein-3e-1At1g15680F-box family proteinO.I.H.G.S.X.
0.3153.70.90PtpAffx.212939.1.S1_atpmrna25319hypothetical protein-2e-8At5g07380unknown proteinO.I.H.G.S.X.
0.2850.50.88PtpAffx.27724.1.S1_atBU873611--2e-1At1g03140splicing factor Prp18 family proteinO.I.H.G.S.X.
0.2747.10.88PtpAffx.9819.1.S1_atDN497878--9e-1At5g35737unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.699.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
11.699.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
7.098.0GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.482.3GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g48209, orthologous to the query gene, PtpAffx.16175.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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