CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.16159.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g46505: SDH4 (HF=4e-3)

Module size 13 genes

NF 0.26

%ile 46.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 91.5 0.79 PtpAffx.16159.1.S1_at DN496713 - - 4e-3 At2g46505 SDH4 O.I. H.G. S.X.
0.42 68.6 0.82 PtpAffx.213013.1.S1_at pmrna25444 hypothetical protein - 7e-1 At1g02590 aldehyde oxidase, putative O.I. H.G. S.X.
0.30 52.0 0.85 PtpAffx.140892.1.A1_at CV241251 - - 6e-1 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) O.I. H.G. S.X.
0.27 47.1 0.85 PtpAffx.221417.1.S1_at pmrna38299 hypothetical protein - 7e-1 At5g20820 auxin-responsive protein-related O.I. H.G. S.X.
0.27 47.1 0.83 Ptp.4211.1.S1_at BU826521 - - 9e-39 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) O.I. H.G. S.X.
0.27 47.1 0.88 PtpAffx.200437.1.S1_at pmrna878 hypothetical protein - 4e-4 At1g54830 NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3) O.I. H.G. S.X.
0.23 40.5 0.87 PtpAffx.57092.1.A1_at CV239044 - - 9e-2 At2g39270 adenylate kinase family protein O.I. H.G. S.X.
0.23 40.5 0.84 PtpAffx.212507.1.S1_x_at pmrna24495 - - 7e+0 At5g56170 - O.I. H.G. S.X.
0.23 40.5 0.83 PtpAffx.203181.1.S1_s_at pmrna6307 cytochrome P450 /// cytochrome P450 - 5e-2 At2g45570 CYP76C2 O.I. H.G. S.X.
0.19 32.7 0.84 PtpAffx.220701.1.S1_at pmrna37114 hypothetical protein - 8e+0 At2g28105 - O.I. H.G. S.X.
0.18 30.8 0.88 PtpAffx.20153.3.S1_at DN490731 hypothetical protein - 1e-18 At2g44530 ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative O.I. H.G. S.X.
0.13 21.6 0.85 Ptp.5628.3.S1_at CK095375 hypothetical protein - 3e-7 At5g11500 unknown protein O.I. H.G. S.X.
0.10 16.3 0.86 PtpAffx.44527.1.A1_at CV228811 - - 2e+0 At5g22440 60S ribosomal protein L10A (RPL10aC) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 97.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0 92.9 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8 86.4 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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