Co-expression analysis

Gene ID PtpAffx.161406.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g26935: zinc finger (DHHC type) family protein (HF=3e-7)
Module size 6 genes
NF 0.11
%ile 22.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3964.60.91PtpAffx.161406.1.S1_atCN192640hypothetical protein-3e-7At3g26935zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.3559.70.91PtpAffx.3132.1.A1_atCV243604hypothetical protein-1e-4At3g54826-O.I.H.G.S.X.
0.2747.10.91PtpAffx.70051.1.A1_atCV233658hypothetical protein-1e+1Atcg00150-O.I.H.G.S.X.
0.1321.60.92PtpAffx.210852.1.S1_atpmrna21313hypothetical protein-8e-10At1g56440serine/threonine protein phosphatase-relatedO.I.H.G.S.X.
0.1118.10.91PtpAffx.80624.1.A1_atBP930343hypothetical protein-1e-9At5g59560SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1)O.I.H.G.S.X.
0.046.90.91PtpAffx.36571.1.S1_s_atCX172486hypothetical protein-2e+0At3g17930unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.393.7GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage