Co-expression analysis

Gene ID	PtpAffx.16082.2.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g13260: unknown protein (HF=2e-11)
Module size	6 genes
NF	0.35
%ile	61.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.92	PtpAffx.16082.2.S1_a_at	CV232704	hypothetical protein	-	2e-11	At5g13260	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	Ptp.3059.1.A1_s_at	CV227410	hypothetical protein	-	5e-13	At5g33320	CUE1 (CAB UNDEREXPRESSED 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.93	PtpAffx.95211.1.A1_a_at	CB239540	hypothetical protein	-	4e+0	At2g41082	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.93	Ptp.2370.1.A1_at	CV228969	hypothetical protein	-	2e-77	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	PtpAffx.160058.1.A1_at	CV230119	hypothetical protein	-	7e-3	At4g00905	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.94	Ptp.5538.1.S1_s_at	AI162588	hypothetical protein	-	1e-31	At5g50370	adenylate kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.9619.1.S1_a_at, orthologous to the query gene, PtpAffx.16082.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	Ta.9619.1.S1_a_at	At5g13260	-	-	8e-10	At3g48860	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.65308.1.A1_s_at	At5g13260	-	-	6e-1	At1g72820	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	TaAffx.118944.1.S1_at	At5g13260	-	-	4e-1	At5g51720	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.112617.1.S1_at	At5g13260	-	-	2e-13	At5g22370	QQT1 (QUATRE-QUART 1)	O.I.	H.G.	S.X.	Please select
0.08	9.4	Ta.9442.1.S1_at	At5g13260	-	-	9e-1	At2g04520	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.14606.1.S1_at	At5g13260	-	-	5e-37	At4g05420	DDB1A (DAMAGED DNA BINDING PROTEIN 1A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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