CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.160277.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g27930: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.49

%ile 78.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 0.89 PtpAffx.160277.1.A1_at CV262870 hypothetical protein - 3e+0 At4g27930 unknown protein O.I. H.G. S.X.
0.67 91.1 0.87 PtpAffx.224715.1.S1_s_at pmrna43527 hypothetical protein - 4e-25 At1g11300 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding O.I. H.G. S.X.
0.44 71.9 0.91 PtpAffx.953.2.A1_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.44 71.9 0.92 PtpAffx.95587.1.A1_at CV240701 hypothetical protein - 1e+0 At5g53280 PDV1 (PLASTID DIVISION1) O.I. H.G. S.X.
0.33 57.5 0.89 PtpAffx.214372.1.S1_at pmrna27964 hypothetical protein - 2e+0 At3g28140 calmodulin-binding protein O.I. H.G. S.X.
0.27 47.1 0.89 PtpAffx.953.2.A1_a_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.85	PtpAffx.115091.1.A1_at	CV267661	NAC domain protein, IPR003441	-	2e+0	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	O.I.	H.G.	S.X.
0.40	67.0	0.86	PtpAffx.6791.1.A1_at	CV275480	hypothetical protein	-	2e-9	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	O.I.	H.G.	S.X.
0.40	67.0	0.91	PtpAffx.212465.1.S1_at	pmrna24423	hypothetical protein	-	2e+0	At5g35945	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.86	PtpAffx.203975.1.S1_at	pmrna7839	hypothetical protein	-	8e-1	At4g11655	transmembrane protein, putative	O.I.	H.G.	S.X.
0.32	55.2	0.85	PtpAffx.206798.1.S1_at	pmrna13494	hypothetical protein	-	3e+0	At5g51620	-	O.I.	H.G.	S.X.
0.32	55.2	0.87	PtpAffx.63756.2.S1_at	CV274245	-	-	3e-1	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	O.I.	H.G.	S.X.
0.31	53.7	0.87	Ptp.3670.2.S1_at	CV229210	hypothetical protein	-	1e-6	At1g21890	nodulin MtN21 family protein	O.I.	H.G.	S.X.
0.29	50.5	0.86	PtpAffx.224607.1.S1_s_at	pmrna43301	predicted small molecule transporter /// pho1-like protein	-	8e-45	At3g23430	PHO1 (phosphate 1)	O.I.	H.G.	S.X.
0.25	43.6	0.83	PtpAffx.225583.1.S1_at	pmrna45028	hypothetical protein	-	4e-9	At2g26560	PLA2A (PHOSPHOLIPASE A 2A)	O.I.	H.G.	S.X.
0.24	41.8	0.82	PtpAffx.953.3.S1_at	CA825166	-	-	1e+0	At1g74620	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.8 98.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1 96.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.7 94.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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