Co-expression analysis

Gene ID PtpAffx.159533.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g32080: PUR ALPHA-1 (HF=2e-15)
Module size 8 genes
NF 0.53
%ile 84.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4774.60.96PtpAffx.159533.1.A1_atCV269395hypothetical protein-2e-15At2g32080PUR ALPHA-1O.I.H.G.S.X.
0.7594.10.97Ptp.1423.1.A1_atCF231434--1e-38At3g13920EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)O.I.H.G.S.X.
0.5582.20.97PtpAffx.5448.2.S1_s_atCK107729hypothetical protein-3e-2At3g22480prefoldin-related KE2 family proteinO.I.H.G.S.X.
0.5380.50.97Ptp.6761.1.S1_atCV225987hypothetical protein-7e-19At3g60820PBF1O.I.H.G.S.X.
0.4673.70.97PtpAffx.4450.3.S1_atBU870188hypothetical protein-4e-1At2g12200ligase, putativeO.I.H.G.S.X.
0.4067.00.98PtpAffx.8027.1.A1_a_atBP936489hypothetical protein-2e-7At5g42520ATBPC6O.I.H.G.S.X.
0.3661.60.97Ptp.4970.1.S1_s_atCF234920--5e-35At3g51310VPS35C (VPS35 HOMOLOG C)O.I.H.G.S.X.
0.3661.60.97PtpAffx.132407.2.A1_a_atBP930395hypothetical protein-1e+0At3g27890NQR (NADPH:QUINONE OXIDOREDUCTASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.092.9GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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