Co-expression analysis

Gene ID	PtpAffx.158573.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g17790: VAR3 (VARIEGATED 3) (HF=1e-3)
Module size	8 genes
NF	0.36
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.158573.1.S1_at	CX658654	hypothetical protein	-	1e-3	At5g17790	VAR3 (VARIEGATED 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.96	PtpAffx.207082.1.S1_at	pmrna14042	hypothetical protein	-	2e-44	At5g08740	NDC1 (NAD(P)H dehydrogenase C1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.96	PtpAffx.213666.1.S1_at	pmrna26686	hypothetical protein	-	2e-4	At4g38380	antiporter/ drug transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.19435.1.S1_a_at	AJ767194	hypothetical protein	-	2e-8	At1g21350	antioxidant/ oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	PtpAffx.200407.1.S1_s_at	pmrna819	hypothetical protein	-	2e-31	At1g28140	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	PtpAffx.201326.1.S1_s_at	pmrna2629	hypothetical protein	-	4e-27	At3g15030	TCP4 (TCP family transcription factor 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.96	PtpAffx.221342.1.S1_at	pmrna38177	hypothetical protein	-	1e-20	At4g10000	electron carrier/ protein disulfide oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.55477.1.S1_s_at	CX186924	hypothetical protein	-	3e-51	At3g24430	HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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