Co-expression analysis

Gene ID	PtpAffx.158517.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g09430: ACLA-3 (HF=2e-86)
Module size	7 genes
NF	0.28
%ile	49.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.94	PtpAffx.158517.1.S1_at	CA928480	hypothetical protein	-	2e-86	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	Ptp.5834.1.A1_s_at	CV273430	hypothetical protein	-	2e-21	At2g01140	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	PtpAffx.450.1.S1_a_at	CK318302	hypothetical protein	-	2e-72	At5g50850	MAB1 (MACCI-BOU)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.163838.2.S1_a_at	BU879285	hypothetical protein	-	1e-34	At2g01140	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.96	Ptp.5780.1.S1_a_at	CV256087	hypothetical protein	-	2e-50	At1g26940	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.95	Ptp.2004.1.A1_at	CK093656	-	-	4e-42	At3g13930	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.96	PtpAffx.450.6.S1_a_at	CN519032	hypothetical protein	-	6e-58	At5g50850	MAB1 (MACCI-BOU)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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