Co-expression analysis

Gene ID	PtpAffx.158132.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g43670: copper amine oxidase, putative (HF=3e-12)
Module size	6 genes
NF	0.51
%ile	81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.91	PtpAffx.158132.1.A1_at	CV282478	hypothetical protein	-	3e-12	At3g43670	copper amine oxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.91	PtpAffx.99162.1.S1_at	CV279989	hypothetical protein	-	1e+0	At2g17870	cold-shock DNA-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.92	PtpAffx.219046.1.S1_s_at	pmrna34844	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	9e-2	At5g60530	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.92	PtpAffx.225478.1.S1_at	pmrna44846	hypothetical protein	-	8e-10	At1g29720	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.210950.1.S1_at	pmrna21514	cationic amino acid transporter	-	7e-14	At4g21120	AAT1 (AMINO ACID TRANSPORTER 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.92	Ptp.7372.2.S1_a_at	CV269484	hypothetical protein	-	6e+0	At5g53420	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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