Co-expression analysis

Gene ID PtpAffx.157025.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g18930: BUD2 (BUSHY AND DWARF 2) (HF=6e-15)
Module size 7 genes
NF 0.02
%ile 5.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.84PtpAffx.157025.1.S1_atCK107493--6e-15At5g18930BUD2 (BUSHY AND DWARF 2)O.I.H.G.S.X.
0.1729.10.83PtpAffx.214167.1.S1_atpmrna27561hypothetical protein-8e-1At5g65080MAF5 (MADS AFFECTING FLOWERING 5)O.I.H.G.S.X.
0.069.80.83PtpAffx.217656.1.S1_atpmrna33008hypothetical protein-1e+1At3g16700fumarylacetoacetate hydrolase family proteinO.I.H.G.S.X.
0.035.20.84PtpAffx.51937.1.A1_atCK096539hypothetical protein-1e-1At4g08300nodulin MtN21 family proteinO.I.H.G.S.X.
0.023.60.84PtpAffx.210708.1.S1_s_atpmrna21002hypothetical protein-1e-1At2g04570GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.012.20.83PtpAffx.212785.1.S1_x_atpmrna25019hypothetical protein-7e-26At5g66540-O.I.H.G.S.X.
0.012.20.84PtpAffx.214521.1.S1_atpmrna28232hypothetical protein-3e-2At5g25340unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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