Co-expression analysis

Gene ID	PtpAffx.154543.1.A1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g34490: ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) (HF=5e-24)
Module size	29 genes
NF	0.45
%ile	74.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.92	PtpAffx.154543.1.A1_a_at	CV268890	-	-	5e-24	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.66	88.7	0.95	PtpAffx.78476.1.A1_at	DN492751	hypothetical protein	-	1e-4	At2g03690	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.96	PtpAffx.7182.3.A1_at	CV253214	-	-	6e-3	At1g79390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.94	PtpAffx.249.93.S1_x_at	BP934988	hypothetical protein	-	0	At5g13490	AAC2 (ADP/ATP carrier 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	Ptp.2347.1.A1_x_at	CV280648	hypothetical protein	-	1e-140	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.153669.1.A1_s_at	CV247741	hypothetical protein	-	1e-12	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	0.94	Ptp.2347.1.A1_at	CV280648	hypothetical protein	-	1e-140	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.93	Ptp.7571.1.S1_s_at	CK092545	hypothetical protein	-	4e+0	At5g55131	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.93	PtpAffx.249.93.S1_at	BP934988	hypothetical protein	-	0	At5g13490	AAC2 (ADP/ATP carrier 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.92	PtpAffx.49746.1.A1_at	CV226295	hypothetical protein	-	4e-57	At1g48790	mov34 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.95	PtpAffx.152061.1.S1_s_at	CK116361	tubulin alpha-8 chain	-	6e-149	At5g19780	TUA5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	Ptp.7345.1.S1_s_at	DN485965	hypothetical protein	-	7e-81	At1g14360	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.93	Ptp.1973.1.S1_at	CV278590	hypothetical protein	-	7e-49	At2g33220	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.94	PtpAffx.14238.5.A1_x_at	CV246135	-	-	1e-3	At4g00860	ATOZI1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.210302.1.S1_at	pmrna20266	hypothetical protein	-	2e+0	At3g29750	ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.161131.1.S1_at	CK098913	hypothetical protein	-	2e-33	At4g12250	GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	Ptp.1833.1.A1_at	CV233188	hypothetical protein	-	3e-2	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.94	PtpAffx.13744.1.S1_a_at	CV264383	Ca2+ antiporter/cation exchanger	-	4e-27	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.95	Ptp.5082.1.S1_s_at	CX654214	hypothetical protein	-	8e-41	At3g52880	monodehydroascorbate reductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.201782.1.S1_s_at	pmrna3552	hypothetical protein	-	2e-74	At4g09810	transporter-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.96	PtpAffx.29775.1.S1_a_at	CV282899	hypothetical protein	-	8e-50	At3g48790	serine C-palmitoyltransferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.95	PtpAffx.104857.1.S1_a_at	CK106237	hypothetical protein	-	8e-12	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.94	PtpAffx.144449.1.S1_s_at	CN520248	hypothetical protein	-	2e-77	At5g17310	UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	Ptp.6193.1.S1_at	CV249273	hypothetical protein	-	1e-19	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.210917.1.S1_at	pmrna21450	hypothetical protein	-	3e-2	At1g54920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.94	PtpAffx.51742.1.S1_at	CV243886	hypothetical protein	-	7e-45	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.94	PtpAffx.14302.1.S1_at	CV256500	hypothetical protein	-	2e-1	At3g11330	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	Ptp.5146.1.S1_at	CF232676	porin/voltage-dependent anion-selective channel protein	-	4e-20	At5g67500	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.20679.2.S1_s_at	CX169043	hypothetical protein	-	2e-47	At2g17800	ARAC1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	95.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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