Co-expression analysis

Gene ID	PtpAffx.153857.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g47450: NOA1 (NO ASSOCIATED 1) (HF=2e-5)
Module size	6 genes
NF	0.69
%ile	95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.96	PtpAffx.153857.1.A1_at	CV239742	-	-	2e-5	At3g47450	NOA1 (NO ASSOCIATED 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.96	PtpAffx.207374.1.S1_at	pmrna14628	hypothetical protein	-	4e-82	At5g66470	GTP binding / RNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	PtpAffx.249.174.S1_at	CK091253	hypothetical protein	-	1e-4	At1g35680	50S ribosomal protein L21, chloroplast / CL21 (RPL21)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.95698.1.A1_s_at	CV235344	hypothetical protein	-	2e-8	At1g06190	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.53433.1.S1_s_at	BU871671	hypothetical protein	-	7e+0	Atmg00680	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.1122.1.S1_a_at	CV282461	hypothetical protein	-	8e-65	At2g33800	ribosomal protein S5 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.3	97.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.2	96.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage