Co-expression analysis

Gene ID	PtpAffx.153422.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g22240: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.44
%ile	73.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.93	PtpAffx.153422.1.A1_at	CV257794	-	-	2e-1	At3g22240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.91	Ptp.3031.2.A1_at	DN484744	-	-	4e+0	At3g05500	rubber elongation factor (REF) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.94	PtpAffx.208375.1.S1_at	pmrna16658	cytochrome P450	-	1e-2	At5g10600	CYP81K2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.205330.1.S1_s_at	pmrna10557	hypothetical protein	-	9e-2	At4g37150	MES9 (METHYL ESTERASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.93	PtpAffx.221860.1.S1_s_at	pmrna38953	cytochrome P450 /// cytochrome P450	-	3e-3	At4g37430	CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.93	Ptp.7601.1.S1_s_at	BU814226	hypothetical protein	-	9e+0	At5g06010	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.8	97.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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