Co-expression analysis

Gene ID	PtpAffx.153114.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g05430: - (HF=4e+0)
Module size	6 genes
NF	0.49
%ile	78.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.89	PtpAffx.153114.1.A1_at	CV269422	-	-	4e+0	At5g05430	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.89	PtpAffx.93656.1.S1_s_at	CV131710	hypothetical protein	-	3e-10	At3g48990	AMP-dependent synthetase and ligase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.4945.1.A1_at	CK096254	hypothetical protein	-	2e-44	At3g48990	AMP-dependent synthetase and ligase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.6281.1.S1_at	BP924413	hypothetical protein	-	6e-10	At3g48990	AMP-dependent synthetase and ligase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.88	PtpAffx.215678.1.S1_s_at	pmrna30024	hypothetical protein	-	3e-1	At4g25220	transporter, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.89	PtpAffx.37570.1.A1_s_at	CV246078	-	-	4e-4	At1g04330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	93.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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