Co-expression analysis

Gene ID PtpAffx.152922.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g26870: self-incompatibility protein-related (HF=1e+0)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.92PtpAffx.152922.1.A1_atCV278271--1e+0At3g26870self-incompatibility protein-relatedO.I.H.G.S.X.
0.7393.60.91PtpAffx.212212.1.S1_atpmrna23941hypothetical protein-8e-8At2g23840HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.4067.00.92PtpAffx.1096.1.A1_atCV248392--1e+0At4g05490F-box family protein (FBL22)O.I.H.G.S.X.
0.3661.60.92Ptp.2219.1.S1_atCV237383--1e-14At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.3559.70.91Ptp.1358.2.A1_atCK092478--2e+0At1g67740PSBYO.I.H.G.S.X.
0.2238.30.93PtpAffx.454.6.A1_s_atCV282596hypothetical protein-2e-8At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.892.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.886.4GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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