Co-expression analysis

Gene ID	PtpAffx.152452.2.A1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g53903: - (HF=4e-1)
Module size	6 genes
NF	0.42
%ile	71.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.89	PtpAffx.152452.2.A1_a_at	CV269086	hypothetical protein	-	4e-1	At1g53903	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.88	PtpAffx.209290.1.S1_at	pmrna18360	hypothetical protein	-	2e-1	At3g47080	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.89	PtpAffx.16351.1.S1_at	DN488804	AP2/ERF domain-containing transcription factor	-	3e-24	At1g64380	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.87	PtpAffx.129726.1.S1_a_at	CV263013	hypothetical protein	-	2e-34	At1g19140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.88	PtpAffx.223273.1.S1_x_at	pmrna41187	Cl-channel clc-7	-	3e-78	At5g49890	CLC-C (CHLORIDE CHANNEL C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.88	PtpAffx.223273.1.S1_at	pmrna41187	Cl-channel clc-7	-	3e-78	At5g49890	CLC-C (CHLORIDE CHANNEL C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.6	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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