CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.15202.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g35100: peptidyl-prolyl cis-trans isomerase (HF=6e-7)

Module size 13 genes

NF 0.64

%ile 93.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 97.7 0.97 PtpAffx.15202.1.S1_at CV264024 hypothetical protein - 6e-7 At5g35100 peptidyl-prolyl cis-trans isomerase O.I. H.G. S.X.
0.85 97.2 0.97 PtpAffx.11267.1.S1_at CV277107 hypothetical protein - 5e-1 At3g26070 plastid-lipid associated protein PAP / fibrillin family protein O.I. H.G. S.X.
0.69 91.5 0.98 PtpAffx.161392.1.S1_s_at AJ773143 - - 1e-40 At2g33450 50S ribosomal protein L28, chloroplast (CL28) O.I. H.G. S.X.
0.67 91.1 0.97 PtpAffx.30798.1.A1_at CK094530 hypothetical protein - 4e-1 At4g14890 ferredoxin family protein O.I. H.G. S.X.
0.60 86.0 0.96 PtpAffx.7998.1.A1_at CN518947 hypothetical protein - 1e-45 At2g20890 PSB29 O.I. H.G. S.X.
0.60 86.0 0.98 Ptp.5637.1.A1_s_at CX172815 hypothetical protein - 1e-26 At3g55800 SBPASE (sedoheptulose-bisphosphatase) O.I. H.G. S.X.
0.59 84.9 0.97 Ptp.3793.1.S1_s_at AY369261.1 precursor of carboxylase h-protein 3, glycine decarboxylase complex - 9e-12 At2g35370 GDCH O.I. H.G. S.X.
0.59 84.9 0.97 PtpAffx.249.144.A1_at CV241597 hypothetical protein - 8e-9 At5g13510 ribosomal protein L10 family protein O.I. H.G. S.X.
0.57 84.2 0.98 PtpAffx.55811.1.A1_at BU825424 hypothetical protein - 2e-40 At2g41680 NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C) O.I. H.G. S.X.
0.55 82.2 0.97 PtpAffx.204434.1.S1_at pmrna8711 hypothetical protein - 2e-8 At5g20935 unknown protein O.I. H.G. S.X.
0.55 82.2 0.97 PtpAffx.101103.1.A1_at CV278368 hypothetical protein - 2e-46 At1g54500 rubredoxin family protein O.I. H.G. S.X.
0.54 80.8 0.97 PtpAffx.57129.1.A1_at CV237860 hypothetical protein - 5e+0 At5g28050 cytidine/deoxycytidylate deaminase family protein O.I. H.G. S.X.
0.49 75.7 0.97 PtpAffx.102795.1.A1_s_at AJ769369 hypothetical protein - 3e-17 At1g50900 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9 92.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.5 83.5 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.5 83.5 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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