Co-expression analysis

Gene ID	PtpAffx.151954.3.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=7e-33)
Module size	6 genes
NF	0.69
%ile	95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.97	PtpAffx.151954.3.S1_at	CX186472	hypothetical protein	-	7e-33	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.96	PtpAffx.151954.1.S1_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.97	PtpAffx.151954.1.S1_a_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	PtpAffx.203390.1.S1_at	pmrna6745	hypothetical protein	-	3e-20	At2g33550	gt-2-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	Ptp.3530.1.S1_at	CV262873	hypothetical protein	-	1e-1	At5g25280	serine-rich protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.96	PtpAffx.13452.1.S1_at	CV235856	hypothetical protein	-	2e-6	At5g63910	FCLY (FARNESYLCYSTEINE LYASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1611941_at, orthologous to the query gene, PtpAffx.151954.3.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	1611941_at	At3g58180	-	-	3e+0	At5g53200	TRY (TRIPTYCHON)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1607069_at	At3g58180	hypothetical protein LOC100256938	-	2e+0	At3g58150	-	O.I.	H.G.	S.X.	Please select
0.17	18.2	1607534_at	At3g58180	hypothetical protein LOC100248163	-	3e-11	At2g38460	ATIREG1 (IRON-REGULATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1611386_at	At3g58180	hypothetical protein LOC100266812	-	1e+0	At3g11230	yippee family protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1613261_at	At3g58180	-	-	7e-12	At5g38820	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	1612901_s_at	At3g58180	hypothetical protein LOC100261431	-	2e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	1620196_at	At3g58180	hypothetical protein LOC100260029	-	2e-2	At2g45590	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	1614761_at	At3g58180	hypothetical protein LOC100266857	-	4e+0	At1g69920	ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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