CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.151954.3.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=7e-33)

Module size 6 genes

NF 0.69

%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.97 PtpAffx.151954.3.S1_at CX186472 hypothetical protein - 7e-33 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.77 94.9 0.96 PtpAffx.151954.1.S1_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.77 94.9 0.97 PtpAffx.151954.1.S1_a_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.57 84.2 0.97 PtpAffx.203390.1.S1_at pmrna6745 hypothetical protein - 3e-20 At2g33550 gt-2-related O.I. H.G. S.X.
0.55 82.2 0.96 Ptp.3530.1.S1_at CV262873 hypothetical protein - 1e-1 At5g25280 serine-rich protein-related O.I. H.G. S.X.
0.42 68.6 0.96 PtpAffx.13452.1.S1_at CV235856 hypothetical protein - 2e-6 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.6 96.2 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4 94.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the rice gene, Os12g0626100, orthologous to the query gene, PtpAffx.151954.3.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 96.8 Os12g0626100 At3g58180 - ARM repeat fold domain containing protein 3e-6 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.47 62.3 Os04g0502300 At3g58180 - 40S ribosomal protein S11 6e-59 At3g48930 EMB1080 (embryo defective 1080) O.I. H.G. S.X.
0.43 55.4 Os08g0517900 At3g58180 - 30S ribosomal protein S16 6e+0 At4g03120 proline-rich family protein O.I. H.G. S.X.
0.35 41.7 Os01g0264800 At3g58180 - Breast carcinoma amplified sequence 2 familyprotein 2e-1 At5g53680 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.34 40.0 Os08g0154700 At3g58180 - Small nuclear ribonucleoprotein (Sm protein)family protein 9e-24 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative O.I. H.G. S.X.
0.33 38.8 Os05g0404600 At3g58180 - CW-type Zn-finger domain containing protein 2e+0 At2g02380 ATGSTZ2 O.I. H.G. S.X.
0.33 38.8 Os04g0484900 At3g58180 - Ypl086cp 2e-147 At5g50320 ELO3 (ELONGATA 3) O.I. H.G. S.X.
0.29 31.1 Os02g0235600 At3g58180 - 60S ribosomal protein L11 (L5) 4e-100 At4g18730 RPL16B O.I. H.G. S.X.
0.27 27.5 Os08g0524000 At3g58180 - Signal recognition particle receptor betasubunit-like protein 2e-4 At2g18770 signal recognition particle binding O.I. H.G. S.X.
0.27 27.5 Os04g0595800 At3g58180 - Secretory carrier membrane protein 2e-16 At1g32050 secretory carrier membrane protein (SCAMP) family protein O.I. H.G. S.X.
0.27 27.5 Os03g0115200 At3g58180 - YOR3513c protein (Fragment) 1e-4 At3g13230 RNA binding O.I. H.G. S.X.
0.25 24.1 Os03g0586600 At3g58180 - DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KDPOLYPEPTIDE(RPABC6) 1e-32 At5g51940 NRPB6A O.I. H.G. S.X.
0.24 22.4 Os06g0150100 At3g58180 - Conserved hypothetical protein 6e-1 At4g04780 MED21 (MEDIATOR 21) O.I. H.G. S.X.
0.24 22.4 Os01g0620100 At3g58180 - WD40-like domain containing protein 6e-4 At1g64350 SEH1H O.I. H.G. S.X.
0.21 17.9 Os05g0357600 At3g58180 - Developmentally regulated GTP binding protein 7e-159 At1g72660 developmentally regulated GTP-binding protein, putative O.I. H.G. S.X.
0.21 17.9 Os06g0300700 At3g58180 - Hypothetical protein 7e-1 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) O.I. H.G. S.X.
0.19 15.1 Os01g0514000 At3g58180 - 50S ribosomal protein L24e 1e-10 At2g44860 60S ribosomal protein L24, putative O.I. H.G. S.X.
0.19 15.1 Os12g0540900 At3g58180 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2)(Tryptophan--tRNA ligase) (TrpRS) 3e-19 At3g04600 tRNA synthetase class I (W and Y) family protein O.I. H.G. S.X.
0.18 13.7 Os02g0102700 At3g58180 - Small nuclear ribonucleoprotein Sm D3 (snRNP coreprotein D3) (Sm-D3) 8e-9 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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