Co-expression analysis

Gene ID PtpAffx.151954.3.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=7e-33)
Module size 6 genes
NF 0.69
%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.97PtpAffx.151954.3.S1_atCX186472hypothetical protein-7e-33At3g58180PBS lyase HEAT-like repeat-containing proteinO.I.H.G.S.X.
0.7794.90.96PtpAffx.151954.1.S1_atCV259016hypothetical protein-6e-26At3g58180PBS lyase HEAT-like repeat-containing proteinO.I.H.G.S.X.
0.7794.90.97PtpAffx.151954.1.S1_a_atCV259016hypothetical protein-6e-26At3g58180PBS lyase HEAT-like repeat-containing proteinO.I.H.G.S.X.
0.5784.20.97PtpAffx.203390.1.S1_atpmrna6745hypothetical protein-3e-20At2g33550gt-2-relatedO.I.H.G.S.X.
0.5582.20.96Ptp.3530.1.S1_atCV262873hypothetical protein-1e-1At5g25280serine-rich protein-relatedO.I.H.G.S.X.
0.4268.60.96PtpAffx.13452.1.S1_atCV235856hypothetical protein-2e-6At5g63910FCLY (FARNESYLCYSTEINE LYASE)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.2GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.494.0GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.494.0GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig19784_at, orthologous to the query gene, PtpAffx.151954.3.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6178.7Contig19784_atAt3g58180--2e-4At4g18070unknown proteinO.I.H.G.S.X.
0.6480.9Contig16821_atAt3g58180--4e+0Atmg00280-O.I.H.G.S.X.
0.5470.3HVSMEn0004H06r2_atAt3g58180--4e-16At2g18390TTN5 (TITAN 5)O.I.H.G.S.X.
0.5268.3EBan01_SQ003_M14_atAt3g58180--9e+0At4g16980arabinogalactan-protein familyO.I.H.G.S.X.
0.4356.4Contig22892_atAt3g58180--3e-4At1g17890GER2O.I.H.G.S.X.
0.4255.2Contig16409_atAt3g58180--2e-12At3g29810COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR)O.I.H.G.S.X.
0.4053.1HM07M20r_atAt3g58180--1e+1At5g56050-O.I.H.G.S.X.
0.4053.1rbaal33p02_atAt3g58180--6e-3At3g15260protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.4053.1Contig19539_atAt3g58180--2e-1At4g11385unknown proteinO.I.H.G.S.X.
0.3950.5Contig12885_atAt3g58180--4e-12At3g48620-O.I.H.G.S.X.
0.3647.1Contig24294_atAt3g58180--5e+0At4g34590GBF6 (G-BOX BINDING FACTOR 6)O.I.H.G.S.X.
0.3342.6Contig10764_atAt3g58180--6e+0At5g42965nucleic acid binding / ribonuclease HO.I.H.G.S.X.
0.3342.6Contig22550_atAt3g58180--5e+0At5g26110ATP binding / catalytic/ protein kinaseO.I.H.G.S.X.
0.3138.6Contig1166_s_atAt3g58180--7e-18At1g07790HTB1O.I.H.G.S.X.
0.2935.5HZ50I02r_atAt3g58180--3e+0At4g30590plastocyanin-like domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage