CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.151954.3.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=7e-33)

Module size 6 genes

NF 0.69

%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.97 PtpAffx.151954.3.S1_at CX186472 hypothetical protein - 7e-33 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.77 94.9 0.96 PtpAffx.151954.1.S1_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.77 94.9 0.97 PtpAffx.151954.1.S1_a_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.57 84.2 0.97 PtpAffx.203390.1.S1_at pmrna6745 hypothetical protein - 3e-20 At2g33550 gt-2-related O.I. H.G. S.X.
0.55 82.2 0.96 Ptp.3530.1.S1_at CV262873 hypothetical protein - 1e-1 At5g25280 serine-rich protein-related O.I. H.G. S.X.
0.42 68.6 0.96 PtpAffx.13452.1.S1_at CV235856 hypothetical protein - 2e-6 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.97	PtpAffx.151954.3.S1_at	CX186472	hypothetical protein	-	7e-33	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.
0.77	94.9	0.96	PtpAffx.151954.1.S1_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.
0.77	94.9	0.97	PtpAffx.151954.1.S1_a_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.
0.57	84.2	0.97	PtpAffx.203390.1.S1_at	pmrna6745	hypothetical protein	-	3e-20	At2g33550	gt-2-related	O.I.	H.G.	S.X.
0.55	82.2	0.96	Ptp.3530.1.S1_at	CV262873	hypothetical protein	-	1e-1	At5g25280	serine-rich protein-related	O.I.	H.G.	S.X.
0.42	68.6	0.96	PtpAffx.13452.1.S1_at	CV235856	hypothetical protein	-	2e-6	At5g63910	FCLY (FARNESYLCYSTEINE LYASE)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.6 96.2 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4 94.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.6	96.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g58180, orthologous to the query gene, PtpAffx.151954.3.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g58180 824987 PBS lyase HEAT-like repeat-containing protein F:lyase activity, binding;P:biological_process unknown;C:phycobilisome;BOMFAP O.I. H.G. S.X.
0.52 67.4 At1g65650 842876 UCH2 F:ubiquitin-specific protease activity, ubiquitin thiolesterase activity;P:protein deubiquitination, shoot development, shoot morphogenesis, leaf development, ubiquitin-dependent protein catabolic process;C:nucleus, intracellular, cytoplasm;MFOP O.I. H.G. S.X.
0.48 62.5 At2g19540 816473 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBA O.I. H.G. S.X.
0.47 61.2 At2g42910 818892 ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4) F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:plasma membrane, cytoplasm;BOMFPAV O.I. H.G. S.X.
0.44 57.2 At5g59460 836065 scarecrow-like transcription factor 11 (SCL11) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. H.G. S.X.
0.43 55.3 At4g01320 828209 ATSTE24 CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum. O.I. H.G. S.X.
0.43 55.3 At4g31180 829246 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative F:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:response to cadmium ion, aspartyl-tRNA aminoacylation;C:chloroplast, cytoplasm;BOMFAP O.I. H.G. S.X.
0.42 53.9 At2g43770 818980 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOBPAV O.I. H.G. S.X.
0.42 53.9 At4g26310 828737 elongation factor P (EF-P) family protein F:translation elongation factor activity;P:translational elongation;C:unknown;BOPA O.I. H.G. S.X.
0.40 50.8 At1g22920 838899 CSN5A (COP9 SIGNALOSOME 5A) AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. O.I. H.G. S.X.
0.40 50.8 At3g25545 822141 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.40 50.8 At3g22320 821801 NRPB5 Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5. O.I. H.G. S.X.
0.39 48.4 At5g44320 834457 eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative F:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOFP O.I. H.G. S.X.
0.38 46.7 At2g45240 819132 MAP1A (METHIONINE AMINOPEPTIDASE 1A) Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development. O.I. H.G. S.X.
0.37 45.0 At5g67220 836857 nitrogen regulation family protein F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process;C:mitochondrion;BOMFPA O.I. H.G. S.X.
0.37 45.0 At4g19210 827661 ATRLI2 member of RLI subfamily O.I. H.G. S.X.
0.37 45.0 At5g62050 836325 OXA1 essential factor for protein sorting and assembly into membranes O.I. H.G. S.X.
0.35 41.6 At5g45620 834602 26S proteasome regulatory subunit, putative (RPN9) F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:proteasome regulatory particle, lid subcomplex;MFOP O.I. H.G. S.X.
0.35 41.6 At2g20390 816558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. H.G. S.X.
0.35 41.6 At4g39520 830106 GTP-binding protein, putative F:GTP binding;P:unknown;C:intracellular;BOMAFP O.I. H.G. S.X.
0.35 41.6 At2g44020 819007 mitochondrial transcription termination factor-related / mTERF-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.35 41.6 At5g22330 832293 RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) F:protein binding;P:defense response to fungus, incompatible interaction, meristem development;C:nucleolus, nucleus, chloroplast;BOMFAP O.I. H.G. S.X.
0.35 41.6 At5g40530 834051 - F:unknown;P:unknown;C:unknown;MOFP O.I. H.G. S.X.
0.34 39.8 At1g64550 842763 ATGCN3 member of GCN subfamily O.I. H.G. S.X.
0.34 39.8 At2g46230 819231 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPA O.I. H.G. S.X.
0.33 38.1 At5g05000 830382 TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34) Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast. O.I. H.G. S.X.
0.33 38.1 At1g20200 838609 EMB2719 (EMBRYO DEFECTIVE 2719) F:enzyme regulator activity;P:embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process;C:plasma membrane, proteasome regulatory particle, lid subcomplex;MFPO O.I. H.G. S.X.
0.33 38.1 At3g61620 825335 RRP41 exonuclease RRP41 (RRP41) O.I. H.G. S.X.
0.32 35.7 At2g32070 817767 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOF O.I. H.G. S.X.
0.32 35.7 At3g57290 824896 EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation. O.I. H.G. S.X.
0.32 35.7 At5g23250 832389 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative F:succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity, binding, ATP citrate synthase activity, catalytic activity;P:metabolic process;C:mitochondrion;OBMAFP O.I. H.G. S.X.
0.32 35.7 At2g39990 818587 EIF2 translation initiation factor eIF2 p47 subunit homolog O.I. H.G. S.X.
0.32 35.7 At5g14590 831311 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative F:isocitrate dehydrogenase (NADP+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;P:isocitrate metabolic process, metabolic process;C:mitochondrion, chloroplast;OBMPFA O.I. H.G. S.X.
0.32 35.7 At4g22720 828368 glycoprotease M22 family protein F:endopeptidase activity, metalloendopeptidase activity, zinc ion binding;P:proteolysis;C:cellular_component unknown;OBMFAP O.I. H.G. S.X.
0.32 35.7 At3g22630 821834 PBD1 (20S PROTEASOME BETA SUBUNIT D1) Encodes 20S proteasome beta subunit PBD1 (PBD1). O.I. H.G. S.X.
0.32 35.7 At1g64520 842760 RPN12a (Regulatory Particle non-ATPase 12a) F:peptidase activity;P:in 14 processes;C:proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope;MFOP O.I. H.G. S.X.
0.31 33.8 At5g15810 831438 N2,N2-dimethylguanosine tRNA methyltransferase family protein F:RNA binding, tRNA (guanine-N2-)-methyltransferase activity;P:tRNA processing;C:cellular_component unknown;OMAFBP O.I. H.G. S.X.
0.31 33.8 At1g04510 839503 transducin family protein / WD-40 repeat family protein F:ubiquitin-protein ligase activity, nucleotide binding;P:response to cadmium ion;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOBPA O.I. H.G. S.X.
0.30 32.1 At1g06560 837167 NOL1/NOP2/sun family protein F:RNA binding;P:biological_process unknown;C:cellular_component unknown;BOMAFP O.I. H.G. S.X.
0.30 32.1 At1g73180 843652 eukaryotic translation initiation factor-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFOPB O.I. H.G. S.X.
0.29 30.3 At3g12370 820415 ribosomal protein L10 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOP O.I. H.G. S.X.
0.29 30.3 At3g62940 825469 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. H.G. S.X.
0.28 30.3 At2g25570 817096 binding F:binding;P:biological_process unknown;C:unknown;BOMPVF O.I. H.G. S.X.
0.28 30.3 At5g27470 832806 seryl-tRNA synthetase / serine--tRNA ligase F:serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, seryl-tRNA aminoacylation;C:cytosol;OBMFAP O.I. H.G. S.X.
0.28 30.3 At5g19680 832088 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA O.I. H.G. S.X.
0.27 26.2 At5g60990 836220 DEAD/DEAH box helicase, putative (RH10) F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAV O.I. H.G. S.X.
0.27 26.2 At5g20920 832216 EIF2 BETA protein synthesis initiation factor eIF2 beta O.I. H.G. S.X.
0.25 22.6 At3g27080 822326 TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3) Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins O.I. H.G. S.X.
0.25 22.6 At1g80620 844401 ribosomal protein S15 family protein F:structural constituent of ribosome;P:translation;C:small ribosomal subunit, ribosome, intracellular, chloroplast;BOPMF O.I. H.G. S.X.
0.25 22.6 At3g07300 819918 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP O.I. H.G. S.X.
0.25 22.6 At4g18040 827529 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein. O.I. H.G. S.X.
0.24 20.7 At5g40770 834077 ATPHB3 (PROHIBITIN 3) prohibitin 3 O.I. H.G. S.X.
0.23 19.3 At1g16870 838258 mitochondrial 28S ribosomal protein S29-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP O.I. H.G. S.X.
0.23 19.3 At3g60820 825253 PBF1 Encodes 20S proteasome beta subunit PBF1 (PBF1). O.I. H.G. S.X.
0.22 17.5 At1g04170 839238 EIF2 GAMMA protein synthesis initiation factor eIF2 gamma O.I. H.G. S.X.
0.21 15.8 At3g59990 825169 MAP2B (METHIONINE AMINOPEPTIDASE 2B) Encodes a MAP2 like methionine aminopeptidase O.I. H.G. S.X.
0.20 14.4 At2g34520 818015 RPS14 (mitochondrial ribosomal protein S14) nuclear-encoded mitochondrial ribosomal protein S14 O.I. H.G. S.X.
0.19 12.7 At5g51510 835225 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.19 12.7 At5g64960 836620 CDKC2 (Cyclin dependent kinase group C 2) Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components. O.I. H.G. S.X.
0.19 12.7 At4g30480 829171 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:cellular_component unknown;MOPFBAV O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At3g58180	824987	PBS lyase HEAT-like repeat-containing protein	F:lyase activity, binding;P:biological_process unknown;C:phycobilisome;BOMFAP	O.I.	H.G.	S.X.
0.52	67.4	At1g65650	842876	UCH2	F:ubiquitin-specific protease activity, ubiquitin thiolesterase activity;P:protein deubiquitination, shoot development, shoot morphogenesis, leaf development, ubiquitin-dependent protein catabolic process;C:nucleus, intracellular, cytoplasm;MFOP	O.I.	H.G.	S.X.
0.48	62.5	At2g19540	816473	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBA	O.I.	H.G.	S.X.
0.47	61.2	At2g42910	818892	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:plasma membrane, cytoplasm;BOMFPAV	O.I.	H.G.	S.X.
0.44	57.2	At5g59460	836065	scarecrow-like transcription factor 11 (SCL11)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	H.G.	S.X.
0.43	55.3	At4g01320	828209	ATSTE24	CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum.	O.I.	H.G.	S.X.
0.43	55.3	At4g31180	829246	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	F:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:response to cadmium ion, aspartyl-tRNA aminoacylation;C:chloroplast, cytoplasm;BOMFAP	O.I.	H.G.	S.X.
0.42	53.9	At2g43770	818980	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOBPAV	O.I.	H.G.	S.X.
0.42	53.9	At4g26310	828737	elongation factor P (EF-P) family protein	F:translation elongation factor activity;P:translational elongation;C:unknown;BOPA	O.I.	H.G.	S.X.
0.40	50.8	At1g22920	838899	CSN5A (COP9 SIGNALOSOME 5A)	AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype.	O.I.	H.G.	S.X.
0.40	50.8	At3g25545	822141	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.40	50.8	At3g22320	821801	NRPB5	Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.	O.I.	H.G.	S.X.
0.39	48.4	At5g44320	834457	eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative	F:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOFP	O.I.	H.G.	S.X.
0.38	46.7	At2g45240	819132	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.	O.I.	H.G.	S.X.
0.37	45.0	At5g67220	836857	nitrogen regulation family protein	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process;C:mitochondrion;BOMFPA	O.I.	H.G.	S.X.
0.37	45.0	At4g19210	827661	ATRLI2	member of RLI subfamily	O.I.	H.G.	S.X.
0.37	45.0	At5g62050	836325	OXA1	essential factor for protein sorting and assembly into membranes	O.I.	H.G.	S.X.
0.35	41.6	At5g45620	834602	26S proteasome regulatory subunit, putative (RPN9)	F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:proteasome regulatory particle, lid subcomplex;MFOP	O.I.	H.G.	S.X.
0.35	41.6	At2g20390	816558	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	H.G.	S.X.
0.35	41.6	At4g39520	830106	GTP-binding protein, putative	F:GTP binding;P:unknown;C:intracellular;BOMAFP	O.I.	H.G.	S.X.
0.35	41.6	At2g44020	819007	mitochondrial transcription termination factor-related / mTERF-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.35	41.6	At5g22330	832293	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	F:protein binding;P:defense response to fungus, incompatible interaction, meristem development;C:nucleolus, nucleus, chloroplast;BOMFAP	O.I.	H.G.	S.X.
0.35	41.6	At5g40530	834051	-	F:unknown;P:unknown;C:unknown;MOFP	O.I.	H.G.	S.X.
0.34	39.8	At1g64550	842763	ATGCN3	member of GCN subfamily	O.I.	H.G.	S.X.
0.34	39.8	At2g46230	819231	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPA	O.I.	H.G.	S.X.
0.33	38.1	At5g05000	830382	TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)	Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast.	O.I.	H.G.	S.X.
0.33	38.1	At1g20200	838609	EMB2719 (EMBRYO DEFECTIVE 2719)	F:enzyme regulator activity;P:embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process;C:plasma membrane, proteasome regulatory particle, lid subcomplex;MFPO	O.I.	H.G.	S.X.
0.33	38.1	At3g61620	825335	RRP41	exonuclease RRP41 (RRP41)	O.I.	H.G.	S.X.
0.32	35.7	At2g32070	817767	CCR4-NOT transcription complex protein, putative	F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOF	O.I.	H.G.	S.X.
0.32	35.7	At3g57290	824896	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation.	O.I.	H.G.	S.X.
0.32	35.7	At5g23250	832389	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	F:succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity, binding, ATP citrate synthase activity, catalytic activity;P:metabolic process;C:mitochondrion;OBMAFP	O.I.	H.G.	S.X.
0.32	35.7	At2g39990	818587	EIF2	translation initiation factor eIF2 p47 subunit homolog	O.I.	H.G.	S.X.
0.32	35.7	At5g14590	831311	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	F:isocitrate dehydrogenase (NADP+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;P:isocitrate metabolic process, metabolic process;C:mitochondrion, chloroplast;OBMPFA	O.I.	H.G.	S.X.
0.32	35.7	At4g22720	828368	glycoprotease M22 family protein	F:endopeptidase activity, metalloendopeptidase activity, zinc ion binding;P:proteolysis;C:cellular_component unknown;OBMFAP	O.I.	H.G.	S.X.
0.32	35.7	At3g22630	821834	PBD1 (20S PROTEASOME BETA SUBUNIT D1)	Encodes 20S proteasome beta subunit PBD1 (PBD1).	O.I.	H.G.	S.X.
0.32	35.7	At1g64520	842760	RPN12a (Regulatory Particle non-ATPase 12a)	F:peptidase activity;P:in 14 processes;C:proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope;MFOP	O.I.	H.G.	S.X.
0.31	33.8	At5g15810	831438	N2,N2-dimethylguanosine tRNA methyltransferase family protein	F:RNA binding, tRNA (guanine-N2-)-methyltransferase activity;P:tRNA processing;C:cellular_component unknown;OMAFBP	O.I.	H.G.	S.X.
0.31	33.8	At1g04510	839503	transducin family protein / WD-40 repeat family protein	F:ubiquitin-protein ligase activity, nucleotide binding;P:response to cadmium ion;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOBPA	O.I.	H.G.	S.X.
0.30	32.1	At1g06560	837167	NOL1/NOP2/sun family protein	F:RNA binding;P:biological_process unknown;C:cellular_component unknown;BOMAFP	O.I.	H.G.	S.X.
0.30	32.1	At1g73180	843652	eukaryotic translation initiation factor-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFOPB	O.I.	H.G.	S.X.
0.29	30.3	At3g12370	820415	ribosomal protein L10 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOP	O.I.	H.G.	S.X.
0.29	30.3	At3g62940	825469	OTU-like cysteine protease family protein	F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	H.G.	S.X.
0.28	30.3	At2g25570	817096	binding	F:binding;P:biological_process unknown;C:unknown;BOMPVF	O.I.	H.G.	S.X.
0.28	30.3	At5g27470	832806	seryl-tRNA synthetase / serine--tRNA ligase	F:serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, seryl-tRNA aminoacylation;C:cytosol;OBMFAP	O.I.	H.G.	S.X.
0.28	30.3	At5g19680	832088	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA	O.I.	H.G.	S.X.
0.27	26.2	At5g60990	836220	DEAD/DEAH box helicase, putative (RH10)	F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	H.G.	S.X.
0.27	26.2	At5g20920	832216	EIF2 BETA	protein synthesis initiation factor eIF2 beta	O.I.	H.G.	S.X.
0.25	22.6	At3g27080	822326	TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)	Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins	O.I.	H.G.	S.X.
0.25	22.6	At1g80620	844401	ribosomal protein S15 family protein	F:structural constituent of ribosome;P:translation;C:small ribosomal subunit, ribosome, intracellular, chloroplast;BOPMF	O.I.	H.G.	S.X.
0.25	22.6	At3g07300	819918	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP	O.I.	H.G.	S.X.
0.25	22.6	At4g18040	827529	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)	eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein.	O.I.	H.G.	S.X.
0.24	20.7	At5g40770	834077	ATPHB3 (PROHIBITIN 3)	prohibitin 3	O.I.	H.G.	S.X.
0.23	19.3	At1g16870	838258	mitochondrial 28S ribosomal protein S29-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP	O.I.	H.G.	S.X.
0.23	19.3	At3g60820	825253	PBF1	Encodes 20S proteasome beta subunit PBF1 (PBF1).	O.I.	H.G.	S.X.
0.22	17.5	At1g04170	839238	EIF2 GAMMA	protein synthesis initiation factor eIF2 gamma	O.I.	H.G.	S.X.
0.21	15.8	At3g59990	825169	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	Encodes a MAP2 like methionine aminopeptidase	O.I.	H.G.	S.X.
0.20	14.4	At2g34520	818015	RPS14 (mitochondrial ribosomal protein S14)	nuclear-encoded mitochondrial ribosomal protein S14	O.I.	H.G.	S.X.
0.19	12.7	At5g51510	835225	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.19	12.7	At5g64960	836620	CDKC2 (Cyclin dependent kinase group C 2)	Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.	O.I.	H.G.	S.X.
0.19	12.7	At4g30480	829171	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:unknown;C:cellular_component unknown;MOPFBAV	O.I.	H.G.	S.X.

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Oryza_sativa
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Gene ID	PtpAffx.151954.3.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=7e-33)
Module size	6 genes
NF	0.69
%ile	95.8

Co-expression analysis

Gene ID PtpAffx.151954.3.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=7e-33) Module size 6 genes NF 0.69 %ile 95.8

Co-expressed genes

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Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.151954.3.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=7e-33)

Module size 6 genes

NF 0.69

%ile 95.8

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays